Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6024 560 1e-154 seq662 123 3e-23 seq214 109 7e-19 seq169 98.7 1e-15 seq318 87.8 2e-12 seq135 87.8 2e-12 >seq6024 Length=163856 Score = 560 bits (620), Expect = 1e-154 Identities = 731/1008 (73%), Gaps = 10/1008 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| |||||||| || || | || Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| || ||| | ||| | || |||||| | || || ||| | ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 179127 |||| |||||||| | |||||||||||| | ||||| ||| ||||| | || || || Sbjct 37378 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 37436 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || |||||| || | | | |||||| | | |||| |||||||| || | Sbjct 37437 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCA 37496 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || ||| |||| || ||||| ||| | || || | |||| ||| || ||||||||| Sbjct 37497 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCAC 37556 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGT 179307 ||||| |||| ||||| || || ||| | ||||| |||||||| || || ||| || Sbjct 37557 GGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGT 37612 Query 179308 A----TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGT 179363 | || ||||| ||||| || || || ||||||| ||||| || || ||| ||| Sbjct 37613 GCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGT 37672 Query 179364 ATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGC 179423 ||| || || || ||||| || || || ||||||| |||||||| |||||||| || Sbjct 37673 ATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGC 37732 Query 179424 GGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTT 179483 || || ||| ||||| | || || || ||||| || || |||||||| || ||||| || Sbjct 37733 AGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATT 37792 Query 179484 TCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGT 179543 ||| |||||||| ||||| || | | |||| ||||||||| | ||||||||||| | Sbjct 37793 TCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGC 37852 Query 179544 AACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGA 179603 |||||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 37853 TACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 37912 Query 179604 CTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGAT 179663 | | || |||| || || || ||||| |||||||| || ||||| |||||||| || || Sbjct 37913 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 37972 Query 179664 CTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGT 179723 ||| |||||| | ||| |||||| |||||||| || ||||||| | | ||||| || || Sbjct 37973 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 38032 Query 179724 CATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTA 179783 | ||| | ||| | | || |||| | | || || ||||| ||||| ||||| || Sbjct 38033 AACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTA 38092 Query 179784 TGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATAC 179843 ||| || || ||| |||||| | ||||| ||||||||||| || ||||| ||||| || Sbjct 38093 TGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 38152 Query 179844 AAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACA 179903 || || ||||| | || ||||| | ||||||||| |||| || ||||| || || Sbjct 38153 TAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 38212 Query 179904 TGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 38213 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 Score = 545 bits (604), Expect = 3e-150 Identities = 702/962 (73%), Gaps = 5/962 (1%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 ||||| || || | || ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 |||| || || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || |||| || || | ||||| ||||| || || |||||||| || | || | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 ||| || || ||| | || || || || || |||||||| ||||| ||||||| || Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 | | || || || ||||||| | || | || | || ||| | | || | | Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 177884 ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGT 177943 || ||||| ||||||||||||||| | |||||| ||||||||||| ||||| ||| Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTC 178002 |||||| || || ||||||||||| || | || || ||||| | ||||||| | |||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTATCCAATTGGTC 1068 Query 178003 AAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 178062 |||| || || |||| ||||||||| || |||||||||||||| |||| ||| ||| Sbjct 1067 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTG 1008 Query 178063 TATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGG 178122 ||||||| || || ||||| |||||||||||||| || |||||| | || || ||||| | Sbjct 1007 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 948 Query 178123 TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCC 178182 ||||||| || || || ||| |||||||||||| | || || ||| | || Sbjct 947 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCA 888 Query 178183 GTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAA 178242 | || || ||||||| ||| || || | ||||||| ||||| ||||| ||||||| Sbjct 887 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 828 Query 178243 CATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGT 178302 | ||||| ||||| || || |||||||| || || || ||||||||||||||||| | Sbjct 827 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 768 Query 178303 TCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGT 178362 ||||||| || ||||| | || |||||| | || || ||||||||||| || || |||| Sbjct 767 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 708 Query 178363 TCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGT 178422 |||| || | ||| | ||| ||||| || ||||| ||||| ||||| |||||||| | Sbjct 707 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 648 Query 178423 CCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCG 178482 || | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 647 CCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 588 Query 178483 GTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCA 178542 || || |||||||| ||||| ||| | ||| || ||||||||||| || || || || Sbjct 587 ACCTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCATAACTTCCCTCTAGACCTAGCT 529 Query 178543 GC 178544 || Sbjct 528 GC 527 >seq662 Length=431101 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| |||||||| ||||||||||| ||||| || |||| |||||||| || | Sbjct 315078 CTGATGATACATACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTT 315137 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | | ||||| || || ||||| |||||||| || | || ||| | |||||||||| Sbjct 315138 GCAGGGCTGGGGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGT 315197 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || ||||| ||||| | ||||| || || | | | ||||||| || Sbjct 315198 CTGATGGTTCGTTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTT 315257 Query 138707 CATACCCCACATCCGATTGTATAATT 138732 ||||||| || || |||||| | ||| Sbjct 315258 CATACCCAACTTCAGATTGTGTGATT 315283 >seq214 Length=442246 Score = 109 bits (120), Expect = 7e-19 Identities = 148/201 (74%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 179363 TATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTG 179422 |||| || || || || || || || || ||||||| ||||||||| |||||||| | Sbjct 75045 TATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT-TTTGGTGTAG 75103 Query 179423 CGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCT 179482 | || || ||| ||||| | || || || ||||| || | ||||| || ||||| | Sbjct 75104 CAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCAT 75159 Query 179483 TTCACATGATGGGAGTTGC-AG-GTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGG 179540 |||| || ||||| ||||| || |||| | |||| ||||||| | ||||||||||| Sbjct 75160 TTCATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGG 75217 Query 179541 AGTAACTGTAGAGAATACATT 179561 | |||||||| ||||| || Sbjct 75218 TGGTACTGTAGAAAATACTTT 75238 >seq169 Length=810068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 ||||||| |||||| || ||||| ||||| |||||||| |||| | || ||||| | Sbjct 97445 CTGATGACGTGTACATTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCAT 97386 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 || | || ||| | || ||| | ||||| || ||| | || | |||| || ||||||| Sbjct 97385 GTAGGGCAGGTTCTTGCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGT 97326 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 | || ||| ||||||||||| ||||| | || || | | | ||||| || | Sbjct 97325 CCGATGGTAGTTTTCTTGATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTG 97266 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 | || ||||| || ||| | | ||||| || | || || || || || Sbjct 97265 CTTATCCCACTTCTGATGTTGTCATTGAGACACACAAGGAAGAAGATCT 97217 >seq318 Length=904506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 179074 ACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCG 179133 |||||||| | |||||||||||| | |||||| |||||| | || | || || || Sbjct 515867 ACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTCT 515808 Query 179134 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 179193 || |||||| || | | | |||||| | | |||| |||||||| | | || ||| Sbjct 515807 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGGG 515748 Query 179194 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 179253 |||| | || ||||| ||| | || | | |||| ||| || |||||||||||||| Sbjct 515747 GATTTAC-TCGTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGCT 515689 Query 179254 TTCGCCCTAATTG 179266 | | ||||||| Sbjct 515688 GTTGGACTAATTG 515676 >seq135 Length=947859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 178011 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 178070 || || |||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 178071 GCAGAACACAATATCCTTATGCACCCGTTCCACATG 178106 || || || || |||||||||||||| || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605621593259840