Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5661 89.7 7e-13 seq972 89.7 7e-13 seq126 84.2 3e-11 seq73 82.4 1e-10 >seq5661 Length=645 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||| || || | ||| | |||||||||||||||||||||| ||||||||||| | | Sbjct 615 TGAACCTGTCTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGC 556 Query 52027 ATGTTCCTCAATCATATGGAGCTA 52050 ||||||||||||||| || ||||| Sbjct 555 ATGTTCCTCAATCATTTGAAGCTA 532 >seq972 Length=662790 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||| || || | ||| | |||||||||||||||||||||| ||||||||||| | | Sbjct 4316 TGAACCTGTCTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGC 4257 Query 52027 ATGTTCCTCAATCATATGGAGCTA 52050 ||||||||||||||| || ||||| Sbjct 4256 ATGTTCCTCAATCATTTGAAGCTA 4233 >seq126 Length=1049951 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||| ||| || | ||| | |||||||||||||||||||||| ||||||||||| | | Sbjct 146659 TGAACTTGTCTGTCACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGC 146600 Query 52027 ATGTTCCTCAATCATATGGAGCTA 52050 ||||||| ||||||| || | ||| Sbjct 146599 ATGTTCCCCAATCATTTGAAACTA 146576 >seq73 Length=791793 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 |||||||||||||||||||||| ||||||||||| | |||||||||||||||| || | Sbjct 5715 CATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTCAATCATTTGAGG 5774 Query 52048 CTA 52050 ||| Sbjct 5775 CTA 5777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129771126720