Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq5661 87.8 2e-12 seq972 87.8 2e-12 seq73 82.4 1e-10 >seq5661 Length=645 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||||||||||||||| ||||||||||| | |||||||||||||||| || || Sbjct 594 CATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTCAATCATTTGAAG 535 Query 50498 CTA 50500 ||| Sbjct 534 CTA 532 >seq972 Length=662790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||||||||||||||| ||||||||||| | |||||||||||||||| || || Sbjct 4295 CATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTCAATCATTTGAAG 4236 Query 50498 CTA 50500 ||| Sbjct 4235 CTA 4233 >seq73 Length=791793 Score = 82.4 bits (90), Expect = 1e-10 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||||||||||||||| ||||||||||| | |||||||||||||||| || | Sbjct 5715 CATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTCAATCATTTGAGG 5774 Query 50498 CTA 50500 ||| Sbjct 5775 CTA 5777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628483871600640