Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq167 98.7 1e-15 seq1476 91.5 1e-13 >seq167 Length=3484751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| ||||| | ||| ||||| | ||| ||||| || || || || |||||| Sbjct 2202725 CCTCCTCGCAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTATAATCGGCA 2202784 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||||||||||||| ||||| |||||| | ||||| || || || Sbjct 2202785 AGGGTTCTTCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGA 2202844 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || || | | || | || || | | || ||| Sbjct 2202845 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGCTCTCGACT 2202904 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 2202905 TCAAGAGTAATGGTTTTGCCTGTCAAAGTCTTAACGAAGATCTGCAT 2202951 >seq1476 Length=5289327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || | |||| || || || || || || ||||||||| Sbjct 643433 GCCTCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC 643492 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | |||||||| ||||| || ||| |||| ||||| ||||| || || || Sbjct 643493 CAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGG 643552 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||| ||| | | || | ||||| || ||||| Sbjct 643553 GATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 643612 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 643613 CTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 643660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488507212636800