Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq73 98.7 2e-15 seq972 95.1 3e-14 seq81 89.7 1e-12 >seq73 Length=791793 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | || || |||||| | ||||| || ||||||||| Sbjct 5585 AGGCATTTGAATGATGGTGACTTTGTGCTCTTCAATCGACAACCCAGTCTCCATAAAATG 5644 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAA 305423 || || |||| |||| | |||| ||||| | | || || || ||||| | Sbjct 5645 TCAATTATGGGACATAGAATCAAG--ATTATGCCATACTCTACTTTCCGTTTAAACCTGT 5702 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 5703 CTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTC 5762 Query 305484 AATCA 305488 ||||| Sbjct 5763 AATCA 5767 >seq972 Length=662790 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | || || |||||| | ||||| || ||||||||| Sbjct 4425 AGGCATTTGAATGATGGTGACTTTGTGCTCTTCAATCGACAACCCAGTCTCCATAAAATG 4366 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAA 305423 || || |||| |||| | |||| ||||| | | || || || || || | Sbjct 4365 TCAATTATGGGACATAGAATCAAG--ATTATGCCATACTCTACTTTCCGTTTGAACCTGT 4308 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | | || |||||||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 4307 CTGTTACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTC 4248 Query 305484 AATCA 305488 ||||| Sbjct 4247 AATCA 4243 >seq81 Length=1691141 Score = 89.7 bits (98), Expect = 1e-12 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 279845 GATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT 279904 ||| |||| | ||||||||| | || ||||| |||| || | ||| | ||||| Sbjct 499738 GATCTTCAAAGATCTATTCCTTCCATGATTGATGGCCTGAAGCCAACTCAGAGAAAGATA 499679 Query 279905 ATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGT 279964 | |||||||||||||| || || ||||| ||||| ||| ||| ||||||| |||| Sbjct 499678 CTTTTCAGTTGTTTCAAGAGGAATTTGGTCAAGGACATTAAAGTTTCTCAGTTTCAAGGT 499619 Query 279965 TATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTA 280024 ||||| || || | | | ||| || || ||||| |||| | | | | || | Sbjct 499618 TATGTATCTGAGAAGTCTGCTTACCACCATGGTGATCAAAGTCTTAATGCTACAATCATT 499559 Query 280025 GGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAA 280084 || | || || ||||| | | || ||| | || || ||| ||||||| || ||| Sbjct 499558 GGAATGGCACAGAATTTTGTTGGCAGTAATAACATCAACCTTCTTGCACCAAAAGGACAA 499499 Query 280085 TTTGGTTCTCGT 280096 |||||| | ||| Sbjct 499498 TTTGGTACACGT 499487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186721198821064