Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq596 116 2e-21 seq1476 91.5 1e-13 seq229 91.5 1e-13 seq1027 89.7 3e-13 seq41 87.8 1e-12 seq100 82.4 5e-11 >seq596 Length=4721113 Score = 116 bits (128), Expect = 2e-21 Identities = 170/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| || | ||||| || ||||| ||| || || |||||||| || | Sbjct 1300447 CACCACCTCTCAAGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTG 1300506 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || | |||| |||| |||||||| || || || | ||||||||| || | | Sbjct 1300507 CGAGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTG 1300566 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || |||| |||| ||| | ||| ||| || || Sbjct 1300567 GAATTCCTTCCTTGTCTTGGATCTTGGCTTTC-ACATTGTCGATGGTATCGGAAGACTCA 1300625 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || || | || || || ||||| |||| ||||| || ||||||||||| |||||| Sbjct 1300626 ACCTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGGTG 1300683 >seq1476 Length=5289327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || || |||||||||| | || || | || || | ||| Sbjct 643458 TGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGT 643517 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | ||||||||| ||| |||| | |||||||||||| ||||| Sbjct 643518 TTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTT- 643576 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || || | ||| | ||||||||| || || || | ||||| || || || || Sbjct 643577 GGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGT 643636 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 643637 GAGGGTCTTAACGAAGATCTGCAT 643660 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||||| | || || |||| || | ||| Sbjct 643230 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGCCCGTCCTCTAGCTGT 643289 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || |||| | |||||||||| | || | ||||| || || ||| || Sbjct 643290 TTTCCGGCGAAGATCAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTT- 643348 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | |||| || | ||||||||| ||| || || | || || || || || || Sbjct 643349 TGCCTTGACATTATCGATGGTGTCGCTACTTTCAACCTCCAGAGTAATAGTCTTTCCAGT 643408 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||||||||| Sbjct 643409 CAAGGTCTTGACGAAGATCTGCAT 643432 >seq229 Length=2021663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| ||||| || || ||| ||||| || |||||||| || | Sbjct 544597 CCACCACGAAGACGTAGAACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCTGCA 544656 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | || ||||| ||||||||||| | |||||||||| | || Sbjct 544657 AGGGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGG 544716 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| || || ||| |||| ||| | || || ||| ||| Sbjct 544717 ATGCCCTCCTTGTCCTGTATCTTGGCCTTC-ACATTGTCAATAGTATCAGAGCT---TTC 544772 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || ||||| | || || ||||| |||||||| Sbjct 544773 AACTTCCAACGTGATTGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 544823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||| ||| || || || ||||| || | || ||||| | || || Sbjct 547653 CACCAAGTGGAGAGTGGACTCCTTCTGAATATTGTAGTCAGCAAGAGTGCGCCCATCCTC 547712 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || || ||||||| | |||||| || | || | || |||||||| Sbjct 547713 AAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGTGGGATCCCCTCTTTGTCCTG 547772 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGA---TTCCACGTCAACCGTGATCG 33715 |||||| || | ||||| |||| |||||| ||| |||||| |||| ||||| | Sbjct 547773 AATTTT-TGCCTTAACATTGTCAATGGTGTC---TGAGCTTTCCACCTCAAGGGTGATTG 547828 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || ||||||||||| Sbjct 547829 TCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 547862 >seq1027 Length=3367805 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/233 (70%), Gaps = 13/233 (6%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||| | |||||||| | |||||| || || ||| || ||||| ||||||||||| | Sbjct 416610 CCATCCCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGCA 416669 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | ||| ||||| ||||| || | | ||||| || | || Sbjct 416670 AGTGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCAGGTGGG 416729 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTG--TTTCAACATAGTC-ACGGTGTCGCTTGA---T 33696 | ||||| || || | |||| |||| |||| ||| | || || ||| | Sbjct 416730 ATTCCTTCCTTATCCTGGA---TCTGGCTTTC-ACATTGTCGATAGTATC---TGAACTT 416782 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| |||| ||||| ||||| || || | || || |||||||||||||| Sbjct 416783 TCCACCTCAAGTGTGATGGTTTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 416835 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| |||||| || ||||| || || | | || || |||| || Sbjct 416171 CACCAAGTGGAGGGTGGACTCTTTCTGAATGTTATAGTCAGCATGAGTACGACCGTCCTC 416230 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| || ||||||||||| | |||||| ||| | || | || || ||||| Sbjct 416231 AAGCTGTTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 416290 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCG 33715 |||||| | || ||||| ||| | |||||| ||| || || || | || || | Sbjct 416291 AATTTT-GGCTTTAACATTGTCAATGGTGTCAGAGCT---CTCTACTTCCAAAGTAATGG 416346 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| | || || ||||| |||||||| Sbjct 416347 TCTTCCCTGTGAGGGTCTTCACAAAAATCTGCAT 416380 >seq41 Length=2736928 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| || || ||| || || || |||||||| |||| Sbjct 677238 CACCACCACGAAGACGAAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 677297 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| | || |||| || |||||||| || |||| |||||||| ||| | | Sbjct 677298 CAAGAGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGTCGCTGCTGGTCTGGAG 677357 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | ||| || | |||||| || || Sbjct 677358 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTATCGATGGTGTCAGAAGACTCA 677416 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || |||| ||||| || ||||||||||| Sbjct 677417 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 677466 >seq100 Length=1654266 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||||| |||||| || || ||| ||| || || |||||||| |||| Sbjct 547253 CCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 547194 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || ||||| || | | |||||||||| | || Sbjct 547193 AGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 547134 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT---TCC 33699 | || || ||||| || || ||| | || | |||||| ||| ||| Sbjct 547133 ATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTC---TGAGCTCTCC 547077 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || ||||||||||| ||||| Sbjct 547076 ACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 547027 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||||| |||||| || || ||| ||| || || |||||||| |||| Sbjct 554322 CCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 554263 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| || ||||| || | | |||||||||| | || Sbjct 554262 AGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 554203 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT---TCC 33699 | || || ||||| || || ||| | || | |||||| ||| ||| Sbjct 554202 ATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTC---TGAGCTCTCC 554146 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || ||||||||||| ||||| Sbjct 554145 ACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 554096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328679867374080