Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq6024 574 1e-159 seq135 82.4 2e-11 >seq6024 Length=163856 Score = 574 bits (636), Expect = 1e-159 Identities = 710/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| || || || || || |||||||| || || || Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| || || || || ||| | |||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | || || |||||||| |||||||| || |||||||| Sbjct 1306 TTCTGCG--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAA 1249 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | | || | || | || ||| | |||| | | Sbjct 1248 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCT 1189 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 1188 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 1129 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | |||| || |||| Sbjct 1128 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTATCCAATTGG 1070 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 1069 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 1010 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | || || ||||| Sbjct 1009 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 950 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGT 20127 ||||||||| || || ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 949 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGA 891 Query 20128 GC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || ||||| |||| Sbjct 890 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 831 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || ||||| |||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 830 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 771 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 |||||||||| |||||| |||| |||||| | ||||| ||||| || ||||| |||| Sbjct 770 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTT 711 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 ||||| |||| || || || || ||||| || || || || |||||||| || |||| Sbjct 710 GGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 651 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | ||| | | || | | |||||||| ||| |||| |||||||| ||| | || |||| Sbjct 650 AATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTG 591 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| ||||||||||||||||| || ||||| | Sbjct 590 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 531 Query 20487 C 20487 | Sbjct 530 C 530 >seq135 Length=947859 Score = 82.4 bits (90), Expect = 2e-11 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 19953 GTAGC-TTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTA 20011 ||||| || || |||| ||||||| | || ||||| |||| ||||||| ||| | ||| Sbjct 378317 GTAGCCTTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTA 378258 Query 20012 TTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATG 20053 |||||||| || || ||||| || |||||||| || ||||| Sbjct 378257 TTCCAAGCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148818153531792