Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq6024 533 4e-147 seq823 80.6 8e-11 >seq6024 Length=163856 Score = 533 bits (590), Expect = 4e-147 Identities = 699/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| ||||| || || || |||||||| || || || Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| |||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | || || || || | || || |||||||| |||||||| || |||||||| Sbjct 1306 TTCTGCG--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAA 1249 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | || ||| | |||| || | Sbjct 1248 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCT 1189 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 1188 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 1129 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||| ||| | ||| Sbjct 1128 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGT 1069 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| ||| || | |||||| | || || || || || ||||||| ||| | Sbjct 1068 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 1009 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || ||||| || |||||||| || |||||| | ||||| ||||| Sbjct 1008 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGT 949 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| || || ||||| ||||| ||||| ||||| | || || || | | ||| Sbjct 948 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 890 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||| ||||| Sbjct 889 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 830 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 829 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 770 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | ||||| ||||| || ||||| ||||| Sbjct 769 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTG 710 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| || || || || ||||| || || || || ||||| || || ||||| Sbjct 709 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 650 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | |||||||| |||||||| ||||||||| || | || || || Sbjct 649 ATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 590 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| |||||||||||||||||||| || || || || Sbjct 589 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 530 Query 29616 T 29616 | Sbjct 529 T 529 >seq823 Length=108574 Score = 80.6 bits (88), Expect = 8e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| ||||| || || || |||||||| || || |||||||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCC 28827 |||| ||| || ||||||||||| || || || || ||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCC 46745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146655108276304