Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq6024 619 4e-173 seq823 95.1 3e-15 seq102 80.6 8e-11 >seq6024 Length=163856 Score = 619 bits (686), Expect = 4e-173 Identities = 731/982 (74%), Gaps = 8/982 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| || || |||||||| | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||| || | | | | || ||| | ||| || ||||| || ||||||||||||| Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | || || || || | || || ||||| Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTACCC 1277 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||||||| | ||||| || || || | | || | Sbjct 1276 AATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAAT 1217 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | || ||| | |||| || | ||||||||| || |||||||||||||| | Sbjct 1216 TGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1157 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||||||||||||| |||||| || |||||||||||||| || || | Sbjct 1156 CCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 1097 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | |||||||| |||||||||| |||| || | ||||||| | || Sbjct 1096 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 1037 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 || |||||| ||||||| ||| |||||||||||||||| || |||||||| ||||| Sbjct 1036 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 977 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||| | || || |||||||| |||||||| || ||||| ||||| ||||| Sbjct 976 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 917 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| |||| || || | ||| | | ||||| || ||| | | |||| || Sbjct 916 TGGTTC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 858 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||| ||||| |||||||| || || || |||||||| |||| Sbjct 857 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 798 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || ||||||||| |||||| |||||||||| | Sbjct 797 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 738 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | |||||||||||||| || || |||||||| | || | || | ||||| ||||| | Sbjct 737 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTT 678 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | ||||| || || || ||||| ||| | |||| | | |||||||| ||| Sbjct 677 TCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTA 618 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 |||| |||||||| ||| | || ||||||||||| || | || || ||||| ||||||| Sbjct 617 ATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 558 Query 19679 ATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||| || || Sbjct 557 ATGCTCATAACTTCCCTCTAGA 536 >seq823 Length=108574 Score = 95.1 bits (104), Expect = 3e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| || ||||||||||||||||| ||||| |||||||| || || || |||||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 18926 | || ||| |||||||||||||| || || || || ||| | |||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCC 46753 >seq102 Length=2022542 Score = 80.6 bits (88), Expect = 8e-11 Identities = 200/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 18949 CACTTCTACCCAATTTGGGAAGC-TAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 || || |||||||| ||||||| | ||| | |||||||||| | ||||| | || | Sbjct 1592039 CATTTTTACCCAATACGGGAAGCATCATTTA-TTGATGAATGATTATACAATGATGGTTC 1592097 Query 19008 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTG 19067 | | || | || | | ||| | |||| || | ||||||||| | |||| Sbjct 1592098 TTATGAGCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTG 1592157 Query 19068 GGAACTTAGCTAT--CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCT 19125 | || |||| | | | || | ||||||||||||||| ||| | || ||| ||||| Sbjct 1592158 GAAAGTTAGTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCT 1592217 Query 19126 GTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGAC 19185 || | || || | || ||| | |||||||| |||||||||| |||| || Sbjct 1592218 ATTATAGTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGAT 1592277 Query 19186 GCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACAT 19245 | ||||||| | || || | |||| |||||| ||| ||| ||| || ||| || || Sbjct 1592278 GGTATGCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGCTAAATAT 1592337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141138702920592