Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1476 89.7 5e-13 seq596 84.2 2e-11 >seq1476 Length=5289327 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||| || ||| || ||||||| || || || ||||| |||| Sbjct 643011 GACTCCTTCTGAATGTTATAATCGGCCAAGGTACGCCCGTCCTCTAGTTGTTTTCCGGCG 643070 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || ||||| || || || ||||||| |||| Sbjct 643071 AAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATTTTTGCCTTCACG 643130 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| ||| | ||| || |||| || | || || ||||||| || || Sbjct 643131 TTGTCAATAGTGTCGCTGCTCTCAACCTCGAGGGTGATGGTCTTCCCAGTCAAGGTCTTA 643190 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 643191 ACGAAAATCTGCAT 643204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||| ||| || ||||| ||||||||||||||| |||| | Sbjct 643467 GACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCA 643526 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || || |||||||| || ||||| ||| | Sbjct 643527 AAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACG 643586 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||| || |||| || | || || || || || || || Sbjct 643587 TTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTA 643646 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 643647 ACGAAGATCTGCAT 643660 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||| ||| || ||||||| || || |||||||| |||| Sbjct 643239 GACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGCCCGTCCTCTAGCTGTTTTCCGGCG 643298 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| |||||||| || || ||||| ||||| ||| ||| || | Sbjct 643299 AAGATCAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTGACA 643358 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || || || | || | || || ||||||| || || Sbjct 643359 TTATCGATGGTGTCGCTACTTTCAACCTCCAGAGTAATAGTCTTTCCAGTCAAGGTCTTG 643418 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 643419 ACGAAGATCTGCATGCCT 643436 >seq596 Length=4721113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| | ||| | ||||| |||||||| || | Sbjct 1300482 GACTCCTTCTGAATGTTGTAGTCTGCGAGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCG 1300541 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 ||||||||||||| || || || || || ||||| || || || || ||||| Sbjct 1300542 AAGATTAGACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACA 1300601 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| | ||| || |||| || | || ||||| || || ||||| Sbjct 1300602 TTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTC 1300661 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1300662 ACGAAGATCTGCAT 1300675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575311176640