Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq169 98.7 9e-16 seq1476 86.0 6e-12 seq271 82.4 7e-11 >seq169 Length=810068 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | ||||| ||| | || || |||| ||||| | | Sbjct 363931 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAAACTATAACTCTCGAGGTCGAGAGCTCC 363990 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| || || || || || || ||| Sbjct 363991 GACACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAG 364050 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || |||| || ||| || || || || |||| | | || |||||||||| Sbjct 364051 CAAAGGCTGATTTTCGCCGGTAAGCAGCTTGAGGATGGCCGTACCCTCGCCGATTACAAT 364110 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| |||||||| ||||| | || | | |||||||||| Sbjct 364111 ATACAAAAGGAATCCACTCTTCATCTTGTTCTTCGTCTGAGAGGAGG 364157 >seq1476 Length=5289327 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || || ||||| | ||||| | || || || || Sbjct 642976 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCAGT 642917 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||||| || || ||||| || || || || ||| Sbjct 642916 GACACTATTGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 642857 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | || ||| || ||||| ||||||| ||| | | |||||||||| Sbjct 642856 CAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGATTACAAT 642797 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || |||||||| Sbjct 642796 ATTCAGAAGGAATCCAC 642780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| || | ||||| |||| || || || | Sbjct 643660 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATCACTCTCGAGGTAGAGAGCAGC 643601 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| ||||| ||||| || ||| Sbjct 643600 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCGCCAGACCAG 643541 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | ||| ||||| |||||||||| | | | | |||||||||| Sbjct 643540 CAGCGTCTTATCTTTGCCGGGAAACAGCTCGAAGATGGCCGTACTTTGGCCGATTACAAT 643481 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || || || |||||| |||| Sbjct 643480 ATCCAGAAGGAGTCCACCCTTCA 643458 >seq271 Length=609135 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || || || || || || ||||| |||||| | |||| | || |||||| | ||| Sbjct 324199 GACAAGGAAGGGATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAA 324140 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||||| | | ||||||||||| || || ||||| || |||| || || || Sbjct 324139 GATGGTAGAACTCTTGCAGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTG 324080 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || | |||||||||| ||||||| Sbjct 324079 AGGCTTAGAGGAGGAACTATGATCA 324055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445060884391680