Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq33 237 2e-56 >seq33 Length=1871104 Score = 237 bits (262), Expect = 2e-56 Identities = 372/523 (71%), Gaps = 12/523 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | |||||||||||||||| | |||| |||||||||||||| Sbjct 634863 TGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAG-CCGAGGCCTCCTTT 634805 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || ||||||||||| || || | | | ||| |||| | | || | | Sbjct 634804 TGGACTGCAGAGGAGGTCGATCTATCTCAAGATCTCCG-CCAATGGGAGGCCCTAACCTC 634746 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||| ||| || ||||| || ||||| ||||| ||| |||||| |||||||||| Sbjct 634745 CGATGAGAAACACTTCATATCTCATGTCCTTGCCTTCTTT-GCCGCCTCTGATGGCATCG 634687 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| || || ||||| || |||||||| ||||||||| | | ||||| ||| | Sbjct 634686 TTCTCGAAAATCTTGCCGGTCGTTTTATGAAGGAGGTCCAAGTCTCTGAGGCTCGTGCTT 634627 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | || || || || ||||| || || || || |||||||| | || || | | | Sbjct 634626 TCTATGGCTTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTATAGTCTTTTACTGG 634567 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | || || |||| || || ||||||| | | | |||| ||| ||||| || || | Sbjct 634566 AGACTTATATCAAAGATTCGACCGAGAAGAATCGATTATTTCACGCGATCGAGACCGTTC 634507 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | ||| |||||||| || ||||| ||| |||||| || ||| | || Sbjct 634506 CTTGTGTGGCTAAAAAGGCTGAGTGGGCCTTGAGATGGATCGAC--GGATCG----GAGT 634453 Query 1456172 CTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 |||| || ||| | || |||| ||||| |||| ||||| || |||||||| || |||| Sbjct 634452 CTTTCGCTGAGAGACTTGTCGCTTTTGCATGCGTGGAGGGGATATTTTTCTCTGGAAGTT 634393 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| |||||||| || |||||||| | ||||| || Sbjct 634392 TTTGCGCCATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGG 634350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177230174127888