Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6024 634 7e-177 seq214 125 8e-24 seq169 96.9 4e-15 seq135 89.7 6e-13 >seq6024 Length=163856 Score = 634 bits (702), Expect = 7e-177 Identities = 754/1017 (74%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || || || || ||||| |||||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| || ||| | ||| | || |||||| | || || || || ||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || ||||| ||||| || | ||||||||||| | ||||| ||| | || | | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCT-T 37426 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGG 37486 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 ||| || | ||||| || || || ||||| ||| | || || | ||| | ||||| Sbjct 37487 TCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGT 37546 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 ||||||||||||||| |||| || |||||||||||| |||| ||||||||| ||||||| Sbjct 37547 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 37606 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 || | || ||||| ||||| || || ||||||||||| |||||||||||||| Sbjct 37607 ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 37666 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 |||||||| || |||||||| ||||||||| ||||| ||||| |||||||| || Sbjct 37667 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGG 37726 Query 159858 GGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCT 159914 |||||||| || ||| ||| |||| || |||| ||||||| || |||||||| || Sbjct 37727 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAACTGGACGCT 37783 Query 159915 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAAT 159974 ||||| || ||||||||||| ||||| || || |||||| || ||| | || || || Sbjct 37784 GAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTAT 37843 Query 159975 CCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAA 160034 ||||||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 37844 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 37903 Query 160035 GGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 160094 || ||| | || ||||||| ||||| |||||||| ||||| || || |||||||| || Sbjct 37904 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTG 37963 Query 160095 GTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 160154 ||| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| || Sbjct 37964 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 38023 Query 160155 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCT 160214 ||| || || | ||| |||||| || |||| | | ||||| ||| | || || Sbjct 38024 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCT 38083 Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 ||||| || || ||||| ||||||||| | ||||| |||||||||||||||||||| Sbjct 38084 ACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 38143 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 |||||||| || || || || || || ||||| |||||||||||||||| || || Sbjct 38144 TTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 38203 Query 160335 TCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 ||| || ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 38204 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 Score = 589 bits (652), Expect = 2e-163 Identities = 727/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 ||||| | ||| ||||| || | |||||| | || |||| ||||| ||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||||| || | | |||||| ||||| || || |||| ||| | ||||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || || ||||| || || || ||||| ||| |||| || || | ||||| ||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 || || |||||||| || |||||| ||| || || ||| | || || ||||| || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| ||||| |||| || ||| | || || || ||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | || ||| | | || | | || ||||| |||||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 | | ||||||||||| ||||| ||| |||||||| ||||| || || || || | ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 || ||| | ||||||| | |||||||| || || |||| ||||||||| || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 |||||||||||| |||| ||| |||||||||| || || |||||||||||||||||||| Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | || || || | | | || | ||||| || |||| || || || | | Sbjct 913 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| | ||||||||||| ||||| || || || ||||| || || ||||| || || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 | || |||||||||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513 |||| |||||||| || || || |||||||| || | || | || ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573 |||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633 ||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 158634 CACACAACTTCCCACTGGATCTTGCTGCT 158662 | || |||||||| || || || |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 >seq214 Length=442246 Score = 125 bits (138), Expect = 8e-24 Identities = 160/215 (74%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 159793 TTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGT 159852 |||||| | ||||||| || ||||| |||||||||||| ||||| ||||| || ||| Sbjct 75037 TTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCC-AGT 75093 Query 159853 TTCGGGGTAGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAGGGTTTCCACAACTGG 159909 || || |||||||| || ||| ||| |||| || |||| ||||||| | ||||| Sbjct 75094 TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-AATAACTG- 75149 Query 159910 ACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGT 159969 || ||||| || ||||| ||||| ||||| | || |||||| || |||| || Sbjct 75150 ---CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGC 75206 Query 159970 GCAATCCATGGTGCTACTGTAGAGAACACATTGTT 160004 || || ||||||| ||||||||| || || || || Sbjct 75207 GCTATTCATGGTGGTACTGTAGAAAATACTTTATT 75241 >seq169 Length=810068 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 158843 GTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGG 158902 ||||||||| || || || ||||| ||||||||||| | || || ||| | || || Sbjct 97435 GTACATTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGG 97376 Query 158903 TGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATC--AG 158960 | | || ||||| ||||| || ||| |||| | ||| ||||| || |||| || Sbjct 97375 TTCTTGCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAG 97316 Query 158961 TCATTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCC 159020 | |||||| ||||||| || || | ||| || | | ||||| ||||| |||||||| Sbjct 97315 TT-TTCTTG-ATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCC 97258 Query 159021 ACTTCTGAT 159029 ||||||||| Sbjct 97257 ACTTCTGAT 97249 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 158129 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158188 || || |||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 158189 GCAGAACACAACATCCTTATGCACCCGTT 158217 || || || ||||||||||||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572980851292800