Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6024 600 1e-166 seq456 131 2e-25 seq662 113 5e-20 seq54 89.7 6e-13 seq169 86.0 7e-12 seq135 86.0 7e-12 >seq6024 Length=163856 Score = 600 bits (664), Expect = 1e-166 Identities = 730/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | || ||| | | || | | || ||||| ||||||||||||||| | || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 || | ||||||||||| ||||| ||| |||||||| ||||| || || || || ||| Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||| ||| | | ||||| | |||||||| || || |||| ||||||||| || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 ||||||||||||| |||| ||| |||||||||| || || ||||| ||||||||||| | Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | || |||||| | ||||| ||||| |||||||| || || | ||| ||||||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 | | || || || | | | || | ||||| || |||| || || || | Sbjct 914 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 856 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| | ||||||||||||||||| || || || ||||| || || |||||||| || Sbjct 855 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 796 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || ||||||||||||||||| |||||||| || ||||| | || |||||| | Sbjct 795 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 736 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||||||||| || || |||||||||||| | ||| ||||||| ||||| ||| Sbjct 735 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 676 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| || |||||||| |||||||| ||| | | ||| |||||||||||||| | || Sbjct 675 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 616 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 |||||||| || | | || |||||| ||||||||||||||||||||||| ||||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCT 160946 || || |||||||| || ||||| |||||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 540 bits (598), Expect = 1e-148 Identities = 737/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| || ||| | || | || |||||| | || || ||||| || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 161866 | ||| |||||||||||||| | |||||||||||| | || || ||||| ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 37426 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || || ||||| ||||| ||| | | | | |||||| || || || || |||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTACTATGGG 37485 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 |||| || || ||||||||||| || ||| ||| | || || | |||| ||||| Sbjct 37486 GTCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTG 37545 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || ||||| ||||| |||| ||||| || || ||| | ||||| |||||||| || | Sbjct 37546 TTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 37605 Query 162046 GTCTTATTGGTATC-CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 | | || || || || || ||||| || || ||||||||||| |||||||||||| Sbjct 37606 GA-TCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 37664 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || || ||||| || || ||| | |||||||| |||||||||| || || ||| Sbjct 37665 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTT 37724 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTG 162224 || || ||||| || ||| ||||| | | ||| | ||||| || ||||||||||| ||| Sbjct 37725 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTG 37784 Query 162225 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATT 162284 ||||| || ||||||||||| ||||| || || |||||| || || |||| |||||| Sbjct 37785 AACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATT 37844 Query 162285 CACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 162344 || || | || || |||||||| |||| || ||||| || ||||| || || Sbjct 37845 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 37904 Query 162345 GCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| ||| Sbjct 37905 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 37964 Query 162405 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 162464 || || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 37965 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 38024 Query 162465 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 162524 || || || | ||| |||||| || |||| | | ||||| ||||| || || Sbjct 38025 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTA 38084 Query 162525 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACG 162584 ||||| || || ||||| |||||||||| | ||||| ||||||||||| ||||| || Sbjct 38085 CGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 38144 Query 162585 TTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 162644 ||||||||||| || ||||| | || ||||| | ||||| ||| | || || || Sbjct 38145 TTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 38204 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 38205 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 38264 Query 162705 T 162705 | Sbjct 38265 T 38265 >seq456 Length=400266 Score = 131 bits (144), Expect = 2e-25 Identities = 303/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 162159 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGG 162218 |||||| | || ||| | || ||| ||||| | || ||| | |||| || |||||| | Sbjct 321070 TCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAG 321011 Query 162219 ACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATC- 162277 | ||||||| || ||||||| ||||||||| || ||| | | | ||||| || | Sbjct 321010 ATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGC 320951 Query 162278 --TGC--TATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAA 162333 ||| |||||| | || | || ||||| || |||| || ||||| || | || Sbjct 320950 TATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAA 320891 Query 162334 ACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAA 162393 |||| || | | ||| | | || || ||||| |||||||| | |||||||| | Sbjct 320890 ACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCA 320831 Query 162394 ACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTT 162453 ||| ||| ||||| || ||||| || ||||| |||||||| || | || | |||| | Sbjct 320830 ACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCT 320772 Query 162454 TCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTG 162513 | ||||| | | | || || || | | ||| || || || | || | | | | Sbjct 320771 TTATGTTATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGA 320712 Query 162514 CTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTG 162573 || |||| || |||| || || || | ||| || ||| | || ||| |||||| Sbjct 320711 CTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATCT-ATAAGAGGAAAATCCTG 320653 Query 162574 AGTTTGAAACGTTCTACACTAAGAACATTCT 162604 | || | || ||||||||||| || ||||| Sbjct 320652 AATTC-AGACTTTCTACACTAAAAATATTCT 320623 >seq662 Length=431101 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||||| || || || || |||||||| || ||||||||| | ||||| Sbjct 315089 TACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTTGCAGGGCTGGG 315148 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||||| | ||||| || || || | |||||| | ||||| |||||||| || Sbjct 315149 GCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGTCTGATGGTTCG 315208 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| ||||||| | || || || || | | |||| |||||| |||| || ||| Sbjct 315209 TTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTTCATACCCAACT 315268 Query 161306 AGCGATTGTGTGATTCAAAC 161325 |||||||||||||| || Sbjct 315269 TCAGATTGTGTGATTCACAC 315288 >seq54 Length=3626826 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 160746 CCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 160805 || || || || || |||||||||||| | ||||||||||| ||||| |||||||| ||| Sbjct 2788072 CCCGTTGTAGGTATTTGGTTCACTGCTTTAGGTGTTAGCACTATGGCTTTCAACCTAAAC 2788131 Query 160806 GGTTTCAACTTCAACCA 160822 |||||||| |||||||| Sbjct 2788132 GGTTTCAATTTCAACCA 2788148 >seq169 Length=810068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 161125 GTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGG 161184 ||||||| | |||||||| ||||| ||||||||||| | || || ||| | || || Sbjct 97435 GTACATTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGG 97376 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGA--CCAG 161242 | |||||||||| |||||||| ||| || | ||| || || ||||| || || Sbjct 97375 TTCTTGCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAG 97316 Query 161243 TCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 | ||||| |||||||| || || ||| || | || | || |||||||| ||||| Sbjct 97315 T-TTTCTT-GATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCC 97258 Query 161303 ACT 161305 ||| Sbjct 97257 ACT 97255 >seq135 Length=947859 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGC 160514 || || || || ||||||||||| || || ||||| | ||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATGTTAGGC 378210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559461869348800