Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq6024 558 5e-154 seq456 122 1e-22 >seq6024 Length=163856 Score = 558 bits (618), Expect = 5e-154 Identities = 718/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 |||||| || ||| | ||| | |||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | || ||| | | || | | |||||||| ||||| |||||||| || || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | | ||||||||||| ||||| ||||||||| || ||||| || ||||| || ||| Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 |||| ||| | ||||||| | |||||||| || ||||| | ||||| || || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||||||||| ||||||| ||| |||| ||||| || ||||||||||| || ||||| | Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | || |||||||| || || || |||||||| || ||||| || |||||||| ||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638 |||| ||||| || ||| | || | || || || |||| ||| || || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698 |||||| ||||| ||||| ||||| || || || ||||| ||||| || ||||| |||| Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 | || |||||||||||||||||| |||||||| || ||||| | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818 | || ||||||||||| || || |||||||| || | || | ||||| ||||| || | Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878 |||| ||||| ||||| |||||||| || | | || | ||||| ||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938 ||||||| || | | |||||||| || || |||||||| ||||| || || || | Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 181939 CGCACAACTTCCCGCTTGATCTTGCAGC 181966 | || |||||||| || || || || || Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGC 527 Score = 529 bits (586), Expect = 2e-145 Identities = 727/1008 (72%), Gaps = 10/1008 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| || ||| | ||| | || |||||| | || || ||| | ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 182549 |||| ||||| || | ||| ||||||| | ||||| ||| ||||| | || || || Sbjct 37378 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 37436 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || |||||| || | | | |||||| | | |||| |||||||| || | Sbjct 37437 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCA 37496 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || ||| |||| || ||||| ||| | || || | |||| ||| || ||||||||| Sbjct 37497 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCAC 37556 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGA 182729 ||||| |||| || || ||||| ||| | | ||||||||||||||||| | || | Sbjct 37557 GGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCA 37615 Query 182730 ATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 || ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 37616 ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 37675 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| | || ||||| ||||||||| ||||| |||||||| || || Sbjct 37676 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGC 37735 Query 182849 GATCTTCAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTT 182905 || || | ||| || || |||| |||||||| | |||||||| || ||||| || Sbjct 37736 TATATTTCGATTCATCCTCTTTTTCCA--AGGGTTTC-ATAACTGGACGCTGAACCCATT 37792 Query 182906 CCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGT 182965 ||||||||||| ||||| || || | |||| || ||||| | ||||| ||||||| Sbjct 37793 TCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGC 37852 Query 182966 CACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGA 183025 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 37853 TACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 37912 Query 183026 TTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAAT 183085 | ||||| | || || || ||||| |||||||| || || || |||||||| ||||| Sbjct 37913 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAAT 37972 Query 183086 CTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGT 183145 ||| |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 37973 CTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGT 38032 Query 183146 CATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTA 183205 | ||| | ||| | | || |||| | | || || ||||| ||||| ||||| || Sbjct 38033 AACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTA 38092 Query 183206 TGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACAC 183265 ||| || || ||| ||||| | ||||| ||||||||||| || ||||| |||||||| Sbjct 38093 TGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC 38152 Query 183266 AAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACA 183325 || || || || | || ||||| | ||||||||| |||| || ||||| || || Sbjct 38153 TAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCA 38212 Query 183326 TGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||||||| | || |||||||| || |||||||| | || ||||| || Sbjct 38213 TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 122 bits (134), Expect = 1e-22 Identities = 314/469 (67%), Gaps = 12/469 (3%) Strand=Plus/Minus Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCA 182875 ||| ||||| || |||||| |||| || | || || | ||| | || || | || Sbjct 321086 TTGATTTTTTATGCTTTCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCA 321027 Query 182876 GGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGG 182935 | || | |||| || | ||||| || ||||||| ||||||||| || ||| || Sbjct 321026 AGAGTTTTATAACTAGATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTA 320967 Query 182936 TGGAGCACTGCTCAG---TGC--TATCCATGGTGTCACAGTAGAGAATACCTTGTATGAA 182990 | | ||||||||| | ||| ||| ||| |||| | ||||| || || || | |||| Sbjct 320966 TTGGGCACTGCTCTGCTATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAA 320907 Query 182991 GATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTAT 183050 ||||| || | |||||| || | | || | | ||||| || || || ||| Sbjct 320906 GATGGTGATGGTGTAAACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTAT 320847 Query 183051 TCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAG 183110 || | || || || || | |||||||| |||||||| || |||| ||| ||||| Sbjct 320846 TCAGTCGTCACTGCCAACCACTTTTGGTCTCAAATCTTTGGA-TTGCTTTTTCTAATAAA 320788 Query 183111 CGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATT 183170 |||| || | ||||||||||| | | | || || || | | | | | | | || || Sbjct 320787 TGTTGATTATATTTCTTTATGTTATCTATACCAGTAATCGATTTATAGATGAGTGCTCTT 320728 Query 183171 GGGATCATTGGGCTTG-CTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGAT-TA 183228 | || | | | ||| || | ||||| |||| ||||| |||| |||||| || || Sbjct 320727 AGAAT-AGTCGATTTGACTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATCTA 320669 Query 183229 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCT 183277 | || ||| ||||||| ||| |||| |||||||| || || || || Sbjct 320668 TA--AGAGGAAAATCCTGAATTC-AGACTTTCTACACTAAAAATATTCT 320623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614571319294720