Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq6024 562 4e-155 seq662 95.1 1e-14 >seq6024 Length=163856 Score = 562 bits (622), Expect = 4e-155 Identities = 702/960 (73%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || | || ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || |||| ||| | ||||| || || || || || || || || ||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | ||||| ||||| || || |||||||| || |||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || || ||| | || || || || || |||||||| ||||| ||||||| || Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || || || ||||||| | || | || | || ||| | ||||| | | Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 |||||||| ||||||||||||||| | |||| | ||||||||||| ||||| ||| Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||||| || ||||| || ||||| || | || || ||| || ||||||| | ||||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 1067 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| |||||||| | ||||| || || ||||||||||| ||||||| ||| |||| Sbjct 1066 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 1007 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || || |||||||| || |||||||| || |||||||| || || || ||||| Sbjct 1006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 947 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 |||||| ||||| || |||||||| ||||| ||||| ||||| || ||| | | | Sbjct 946 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 887 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 ||||| || |||| ||||| || | ||||| | ||||| ||||| ||||| || Sbjct 886 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 827 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || || ||||| || || ||||| || || || || |||||||||||||||||| || Sbjct 826 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 767 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 |||||| || ||||| | || |||||| | || || ||||||||||| || || ||||| Sbjct 766 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 707 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 ||| || | || | ||||| ||||| || ||||| ||||| ||||| |||||||| || Sbjct 706 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 647 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | | || | ||||| ||||| | || || ||||| || | | |||||||| Sbjct 646 CGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 587 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| ||||| || || || || || |||||||| || || || || || Sbjct 586 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 527 Score = 500 bits (554), Expect = 1e-136 Identities = 717/1006 (71%), Gaps = 12/1006 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| |||||||| || || | || Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| || ||| | ||| | || |||||| | || || ||| | ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCT 179411 |||| ||||| || | |||||||||||| | || || ||| ||||| | || || || Sbjct 37378 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 37436 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | |||||| | | |||| |||||||| || | Sbjct 37437 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCA 37496 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||| ||| | || || | |||| ||| || ||||||||| Sbjct 37497 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCAC 37556 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG---CCTG--A 179586 ||||| |||| || || ||||| ||| | | ||||||||||||||||| | || | Sbjct 37557 GGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAA 37616 Query 179587 TTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTG 179646 ||| ||||||| ||||| || || || |||||||| |||||||| || || || Sbjct 37617 TTGC-----GACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 37671 Query 179647 TTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCG 179706 | ||||| || ||||| | || ||||| ||||||||| ||||| |||||||| | Sbjct 37672 TATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAG 37731 Query 179707 CGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCT 179766 | || || || | ||| | || || | || || || || ||||||||||| ||||| | Sbjct 37732 CAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCAT 37791 Query 179767 TCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAG 179826 | ||||||||||| ||||| || || |||| | || ||||| | ||||| ||||| | Sbjct 37792 TTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTG 37851 Query 179827 TTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTG 179886 ||||||||| ||||| || | ||||||||| || |||||||| || || ||| Sbjct 37852 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 37911 Query 179887 ATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGA 179946 | | || || | ||||| |||||||| ||||| || || |||||||| ||||| || | Sbjct 37912 ACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAA 37971 Query 179947 TCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTG 180006 |||| || |||| ||||| || || || ||| | ||||| || ||||| ||||| || | Sbjct 37972 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAG 38031 Query 180007 TTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTT 180066 | | ||| |||||| || |||| | | ||||| ||||| || || ||||| | Sbjct 38032 TAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCT 38091 Query 180067 ACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACA 180126 | || ||||| |||||||||| | ||||| |||||||| || |||||||| ||||||| Sbjct 38092 ATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACA 38151 Query 180127 CCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCAC 180186 | || || ||||| | || ||||| | ||||| ||| |||| | ||||| || | Sbjct 38152 CTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 38211 Query 180187 ATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 |||| | ||||||| || || ||||| ||| | || || || Sbjct 38212 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 38257 >seq662 Length=431101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 176337 GATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGT 176396 |||||| || ||||| || |||||||| ||||| || || || | || ||||| Sbjct 315080 GATGATACATACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTTGC 315139 Query 176397 CGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGT 176456 | ||||| ||||| || |||||||||| || | | | ||||| || |||||| | Sbjct 315140 AGGGCTGGGGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGTCT 315199 Query 176457 GATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGACTTGCGTATCT 176516 ||| || ||||||||||| ||||||| || |||| | | |||||||| || || Sbjct 315200 GATGGTTCGTTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTTCA 315259 Query 176517 TATCCTACTAGTGATTGCGT 176536 || || ||| ||||| || Sbjct 315260 TACCCAACTTCAGATTGTGT 315279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605963967477120