Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq6024 572 2e-158 seq135 89.7 6e-13 >seq6024 Length=163856 Score = 572 bits (634), Expect = 2e-158 Identities = 724/990 (73%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 | || || |||||||| || | || |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | | || ||| | | || | | || ||||| ||||| ||||||||| | || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796 | | ||||||||||| ||||| ||| |||||||| || || || || || || ||| Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856 |||| ||| | ||||||| | |||||||| || || |||| ||||||||| || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158916 ||||||||||||| |||| ||| |||||||||| || || ||||||||||||||||||| Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 158917 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158976 | || || ||| | || || ||||| |||||||| || || || ||| ||||||||||| Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 158977 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 | | || || || | | | || | ||||| || |||| || || || | Sbjct 914 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 856 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 ||||||| ||||| ||||| |||||||| ||||||||||| || || |||||||| || Sbjct 855 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 796 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || || |||||||||||||| ||| |||||||| || ||||| || || |||||| | Sbjct 795 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 736 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 735 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 676 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || Sbjct 675 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 616 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335 |||||||| ||| | | |||||||| || |||||||||||||||||||| ||||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 159336 GCACACAACTTCCCACTCGACCTTGCTGCT 159365 || || |||||||| || ||||| |||||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 524 bits (580), Expect = 8e-144 Identities = 734/1024 (72%), Gaps = 12/1024 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| || ||| | || | || |||||| | || || ||||| || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | ||| ||||||||||||||| | |||||||||||| | || || ||||| ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 37426 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 160136 || || ||||| ||||| ||| | | | | |||||| || || || || |||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTACTATGGG 37485 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 |||| || || ||||||||||| | ||| ||| | || || | |||| ||||| Sbjct 37486 GTCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTG 37545 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || ||||| ||||| |||| ||||| || || ||| | ||||| |||||||| || | Sbjct 37546 TTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 37605 Query 160257 GTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTC 160312 | ||| || | || ||||| ||||| || || ||||||||||| |||||||| Sbjct 37606 G----ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTT 37661 Query 160313 TTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCC 160372 ||||| |||||||| || || ||| | |||||||| |||||||||| || || Sbjct 37662 TTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGT 37721 Query 160373 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACG 160432 ||||| || ||||| || ||| ||||| | | || | ||||| ||||| ||||||||| Sbjct 37722 TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACG 37781 Query 160433 CTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCC 160492 || ||||| || ||||||||||| ||||| || || |||| | || ||||| | || Sbjct 37782 CTGAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCT 37841 Query 160493 ATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 160552 || ||||| | ||||||||| || || | | ||||||||| || |||||||| || Sbjct 37842 ATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 37901 Query 160553 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 160612 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| Sbjct 37902 CGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTT 37961 Query 160613 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 160672 ||||| || ||||| || |||| ||||| || || || ||| | ||||| || ||||| Sbjct 37962 TGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 38021 Query 160673 TTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAAT 160732 ||||| || || | ||| | |||| | |||| | | ||||| ||||| ||| Sbjct 38022 TTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAAT 38081 Query 160733 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAG 160792 || ||||| || || ||||| ||| ||||| | ||||| |||||||| ||||||||| Sbjct 38082 CTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAG 38141 Query 160793 ACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCC 160852 || |||||||| || || || || | || ||||| | ||||| ||| | || || Sbjct 38142 ACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAA 38201 Query 160853 GACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTT 160912 || || || ||||| ||| |||| ||||| || || ||||| || | || ||||| ||| Sbjct 38202 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTT 38261 Query 160913 TAAT 160916 |||| Sbjct 38262 TAAT 38265 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 158892 GCAGAACACAACATCCTTATGCACCCGTT 158920 || || || ||||||||||||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552431998737920