Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq6024 583 1e-161 seq214 107 2e-18 seq135 93.3 5e-14 seq823 91.5 2e-13 >seq6024 Length=163856 Score = 583 bits (646), Expect = 1e-161 Identities = 726/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| | ||| |||| ||| | || ||| | || |||| ||||| ||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || ||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || |||| || || | ||||||||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || || |||||||| || | || | ||| || || ||| | || || ||||| || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||| ||| | || || || ||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | || ||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| || ||||| ||||||||| || || || || || ||||| | ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | ||||||| | |||||||| || ||||||| ||||||||| || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| ||| |||||||||| || || |||||||||||||||||||| Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || || | | ||| || | ||||| || || | || || || | | Sbjct 913 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| || ||||| || || ||||| || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || || |||||||||||| | || | || ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| || |||||||| |||||||| ||| | |||| ||||||| ||||| |||| | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | |||||||| | |||||||||||||||||||| ||||| | Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCT 179847 | || |||||||| || ||||| |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 535 bits (592), Expect = 5e-147 Identities = 711/982 (72%), Gaps = 4/982 (0%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || ||||| || ||| | || |||| || ||| | ||| Sbjct 37278 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTCGCC 37337 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| | || || ||| | ||||| || ||||| ||||| || | ||| Sbjct 37338 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCT 37397 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || || || |||||| | Sbjct 37398 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCCTGCTAATAG 37456 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | |||||| | | |||| |||||||| || | || ||| |||| || || Sbjct 37457 TTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACAAGGGGATTTTACTCGTTG 37516 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || | |||| ||| || |||||||||||||| |||| ||||| || Sbjct 37517 GTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGG 37576 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATC-CGTCCTTACAATGCTA 180408 |||||| |||| || |||||||| || || | || || || ||||| ||||| | Sbjct 37577 TTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAATTGCGACCTTATAATGCAA 37635 Query 180409 TTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTC 180468 | |||||||||||||| || ||||| ||||| ||||| || || || ||||| |||| Sbjct 37636 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 37695 Query 180469 AGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT 180528 |||| ||||||| ||||| || |||||| |||||||| || ||| ||||| | |||| Sbjct 37696 AGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCT 37755 Query 180529 TTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 || | || || || || |||||||| || ||||| || ||||||||||| ||||| || Sbjct 37756 TTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGGGTTGCCGGCG 37815 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 || |||||| || |||||| || || ||||| | ||||| || || || | | || Sbjct 37816 TATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 37875 Query 180649 AAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTT 180708 ||||||| || ||||| || || || ||| | |||| |||| || ||||||| Sbjct 37876 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 37935 Query 180709 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 180768 | || ||||| || || |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 37936 ATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 37995 Query 180769 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180828 | || ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 37996 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 38055 Query 180829 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCA 180888 |||| | | ||||| ||||| || || ||||| || || ||||| ||| |||||| Sbjct 38056 TTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCC 38115 Query 180889 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAG 180948 | ||||| ||||||||||| || ||||| |||||||| || || || || || || |||| Sbjct 38116 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAG 38175 Query 180949 GACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAG 181008 | | ||||| ||| |||| || ||||| || || |||||| | || |||||||| | Sbjct 38176 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 38235 Query 181009 AAGTTCTACCAAGAGGTAACGC 181030 | ||||||||| | || ||||| Sbjct 38236 AGGTTCTACCACGTGGAAACGC 38257 >seq214 Length=442246 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 180433 TATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCT 180492 |||||||| | |||| || || || || ||||||||||| ||||||| ||||| || Sbjct 75035 TATTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGC-GCCA 75091 Query 180493 CTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGA 180552 |||||| |||||||| || ||| ||||| | |||||| | || || || | ||||| Sbjct 75092 GTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG-- 75149 Query 180553 CCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAG 180612 || ||||| || ||||| ||||| ||||| | || |||||| || || || | Sbjct 75150 --CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCG 75207 Query 180613 CAATCCATGGCGTAACTGTGGAGAACACACTGTAT 180647 | || ||||| | ||||| |||| | ||| ||| Sbjct 75208 CTATTCATGGTGGTACTGT--AGAAAATACTTTAT 75240 >seq135 Length=947859 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 179314 TTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 179373 || ||||||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 179374 GCAGAACACAACATCCTTATGCACCCGTT 179402 || || || ||||||||||||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 >seq823 Length=108574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 178942 GCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCAT 179000 |||||| ||||| || || | |||||| | || |||||||| || |||||||| || || Sbjct 46632 GCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 46690 Query 179001 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 179060 |||||||| || |||| || || | ||||||||||| || || |||||||| || | Sbjct 46691 TCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTAT 46750 Query 179061 CCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTG 179102 || | ||| || || ||| | || || ||||| || || Sbjct 46751 TCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATG 46792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610283642181120