Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq33 192 8e-44 seq241 150 2e-31 seq304 127 3e-24 >seq33 Length=1871104 Score = 192 bits (212), Expect = 8e-44 Identities = 409/604 (68%), Gaps = 14/604 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || | ||||| |||| || || |||||||| || || Sbjct 634287 AAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTT 634346 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 | ||| ||||| | || |||||||| |||||||||||||| |||| |||||| || Sbjct 634347 AATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAA 634406 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTAT 39791 || || || || || |||||| || ||||||||||| || | ||| ||| | Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC--CGT 634464 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| || ||||| ||||| || || |||||||| | || || || || | Sbjct 634465 CGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGT 634524 Query 39852 TAAAGAGATAAT-GTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTA 39907 || ||||| | || | || | |||||| | ||| || || | ||| |||||| Sbjct 634525 ----GAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTA 634580 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || || || || || |||||||| || ||||| || || ||| | || ||| Sbjct 634581 TACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCA 634640 Query 39968 GTAATTTGTACCT-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | | ||| |||| || | |||| | | || | |||||| || || |||||| Sbjct 634641 GAGACTTGGACCTCCTTCATAAAA-CGACCGGCAAGATTTTCGAGAACGATGCCATCAGA 634699 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 |||||||| || || | ||||| || || | ||| ||||||| || | | Sbjct 634700 GGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTC 634759 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| | || ||||| |||| ||| || || || || |||||||| || ||||| || Sbjct 634760 CCATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGC 634819 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 || |||||||| | |||||| | | ||||| ||||| || || |||| || ||| Sbjct 634820 TTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGG 634879 Query 40207 ATTT 40210 ||| Sbjct 634880 GTTT 634883 >seq241 Length=1151104 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | ||| | ||||||| |||| | |||| ||||| |||||||| || Sbjct 845254 TCCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCC 845313 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| ||| |||| ||||| || | || ||||||||| | ||| Sbjct 845314 ATTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGA 845373 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || || |||||||| || | || || | |||||| |||||| || ||| | || Sbjct 845374 AAGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAAT 845433 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | ||||||||||||| Sbjct 845434 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 >seq304 Length=2135540 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | |||| | || | || ||| |||| |||||| Sbjct 1419053 TCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGGAACAATACC 1419112 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| |||||| || ||| | || ||||| || || ||| Sbjct 1419113 ATTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGA 1419172 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| || || || |||||||| Sbjct 1419173 GACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGTATCATATAT 1419232 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 1419233 GCCTTCAATACTATCATCTTTCATG 1419257 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || |||||||||||| | | ||| | || || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| |||||||| || ||||| || |||||||| | || || | ||||| | Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTGTGAATTCCAACAGCAACCCTCATCAGC 1419510 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||||| ||| | | ||| || ||||| || |||||||| Sbjct 1419511 ATGTGCTGAGGCCTCTCTACAACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCAGA 1419570 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || |||||||| || | || |||||||| || ||||| || Sbjct 1419571 GTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686857075767360