Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33 228 6e-55 >seq33 Length=1871104 Score = 228 bits (252), Expect = 6e-55 Identities = 402/582 (69%), Gaps = 8/582 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | |||||| |||||||||| ||||| |||| || |||| Sbjct 634863 TGTTCCCAATCCAATACCCACAGATATGGGAAATGTACAAGAAAGCCGAGGCCTCCTTTT 634804 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| ||||| || || ||| | || |||| || || || ||| || ||| | Sbjct 634803 GGACTGCAGAGGAGGTCGATCTATCTCAAGATCTCCGCCAATGGGAG-GCCCTAACCTCC 634745 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || ||||| || |||||| || | || || ||||| || || || || || Sbjct 634744 GATGAGAAACACTTCATATCTCATGTCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTT 634685 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 |||||| | | |||| ||| | | || || ||| | | || || || ||| Sbjct 634684 CTCGAAAATCTTGCCGGTCGTTTTATGAAGGAGGTCCAAGTCTCTGAGGCTCGTGCTTTC 634625 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| |||||||| || || || |||||||| || || ||||| |||||| | | || Sbjct 634624 TATGGCTTTCAAATCGCGATTGAGAATATTCACTCTGAGATGTATAGTCTTTTACTGGAG 634565 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 || || ||||||||| | ||||||| ||||||| ||| | ||||| || || || ||| Sbjct 634564 ACTTATATCAAAGATTCGACCGAGAAGAATCGATTATTTCACGCGATCGAGACCGTTCCT 634505 Query 44066 ---GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 | | |||| || || || |||||| | | |||||| | | || ||||| Sbjct 634504 TGTGTGGCTAAA---AAGGCTGAGTGGGCCTTGAGATGGATCGACGGATCGGAGTCTTTC 634448 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | || |||||||||| |||||| ||||| || || || || || ||| ||| Sbjct 634447 GCTGAGAGACTTGTCGCTTTTGCATGCGTGGAGGGGATATTTTTCTCTGGAAGTTTTTGC 634388 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| |||| || || || |||||||| || || || || || || ||||| Sbjct 634387 GCCATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGATTAACTTTCTCTAACGAGTTG 634328 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || || || || || || |||||||| || |||||| Sbjct 634327 ATCTCGCGAGACGAGGGTTTGCACTGCGATTTCGCGTGCTTG 634286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426819774120