Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq167 104 2e-17 seq1476 95.1 1e-14 seq169 95.1 1e-14 seq100 95.1 1e-14 >seq167 Length=3484751 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| || || || || || ||||| |||||||| | | ||||| | || ||| Sbjct 1288375 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGCCCATCCTCG 1288316 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || || | ||| || || || || | |||||| || || | Sbjct 1288315 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1288256 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||||| | || | ||||| | | ||||| || | || || | ||| Sbjct 1288255 ATCTTGGCTTTCACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAAGGTGATGGTCTTG 1288196 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||||||||||||||||||||| Sbjct 1288195 CCAGTTAAGGTTTTCACAAAGATTTGCATA 1288166 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| |||| |||||||| | || || || ||||| ||||||||||| | Sbjct 1287937 CCACCCCTCAATCGCAGCACCAAATGGAGTGTGGATTCCTTTTGGATATTGTAGTCTG-C 1287879 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | ||| |||| ||||| || ||||| || | || || | ||| || || || || Sbjct 1287878 AAGTGTACGCCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGG 1287819 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || |||||| ||| | | || | ||||| | | ||| || Sbjct 1287818 AATTCCCTCTTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCAC 1287759 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || |||||||||||||||||||| Sbjct 1287758 CTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 1287711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||| ||| || |||| ||| | ||||| ||||| || || Sbjct 2202983 GTTGACTCCTTCTGGATGTTGTAATCGGCTAATGT-GCGGCCATCTTCAAGCTGCTTGCC 2203041 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || | | |||||||||||| || | || || ||||| ||||||| || Sbjct 2203042 GGCGAAGATCAACCTCTGTTGATCCGGTGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 2203101 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | || || || ||||| |||| ||||| ||||| || Sbjct 2203102 GACGTTATCAATTGTATCGGAGCTCTCGACCTCGAGAGTAATAGTCTTGCCGGTCAGGGT 2203161 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||| ||||| |||||| Sbjct 2203162 TTTCACGAAGATCTGCATA 2203180 >seq1476 Length=5289327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||| ||| || | || | |||||||||||||| ||| Sbjct 643464 GTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGTTTCCCG 643523 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || || ||||| | ||| ||||| || ||| ||| ||| Sbjct 643524 GCAAAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTGGCTTTG 643583 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || || ||||| |||| ||||| || || || Sbjct 643584 ACGTTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGTGAGGGTC 643643 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 643644 TTAACGAAGATCTGCAT 643660 >seq169 Length=810068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || | || | ||| | || || || ||||| |||||||| ||| Sbjct 364159 TGCCTCCTCTCAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCGG 364100 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || || ||||| ||||||||| |||| || | || || || || | Sbjct 364099 CGAGGGTACGGCCATCCTCAAGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGAG 364040 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||| || | | | || | ||||| | | || | Sbjct 364039 GAATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATTGTGTCGGAGCTCTCGA 363980 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || |||||||||| |||||| || || ||||| ||||||||||||||| Sbjct 363979 CCTCGAGAGTTATAGTTTTGCCGGTGAGGGTTTTAACAAAGATTTGCATA 363930 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | || | ||| | ||| || || || || || ||||||||| | Sbjct 363929 CCGCCGCGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 363870 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||||||||| || || || | || | | |||||| || || || Sbjct 363869 AACGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGTGGA 363810 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | || | ||| || | | || || Sbjct 363809 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATAGTATCGGAGCTCTCGACC 363750 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| | ||||| || ||||||||||| ||||| |||||| Sbjct 363749 TCGAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCATA 363702 >seq100 Length=1654266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || ||||||||| | | |||| | || ||| Sbjct 554760 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCG 554701 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || | ||||| | ||| || ||||| || | ||||| || || | Sbjct 554700 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 554641 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| ||||| | | |||||||| | || || | ||| Sbjct 554640 ATCTTGGCCTTGACATTGTCTATTGTGTCGGAGCTCTCAACTTCCAAGGTGATGGTCTTG 554581 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||| |||||| Sbjct 554580 CCAGTGAGGGTCTTCACAAAGATCTGCATA 554551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || ||||||||| | | |||| | || ||| Sbjct 547463 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCG 547404 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || | ||||| | ||| || ||||| || | ||||| || || | Sbjct 547403 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 547344 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| || || | | |||||||| | || || | || Sbjct 547343 ATCTTGGCCTTGACATTGTCTATTGTATCGGAGCTCTCAACTTCCAAGGTGATGGTCTTC 547284 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 547283 CCGGTGAGGGTCTTCACAAAGATCTGCAT 547255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || ||||||||| | | |||| | || ||| Sbjct 554532 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCG 554473 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || | ||||| | ||| || ||||| || | ||||| || || | Sbjct 554472 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 554413 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| || || | | |||||||| | || || | || Sbjct 554412 ATCTTGGCCTTGACATTGTCTATTGTATCGGAGCTCTCAACTTCCAAGGTGATGGTCTTC 554353 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 554352 CCGGTGAGGGTCTTCACAAAGATCTGCAT 554324 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | | |||| | || || Sbjct 547691 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCA 547632 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || ||||| || | ||||| || || | Sbjct 547631 AGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 547572 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| ||||| | | |||||||| | || || | ||| Sbjct 547571 ATCTTGGCCTTGACATTGTCTATTGTGTCGGAGCTCTCAACTTCCAAGGTGATGGTCTTG 547512 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||| |||||| Sbjct 547511 CCAGTGAGGGTCTTCACAAAGATCTGCATA 547482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424903202378688