Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq700 125 9e-24 seq234 95.1 2e-14 seq676 93.3 5e-14 >seq700 Length=103685 Score = 125 bits (138), Expect = 9e-24 Identities = 298/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | | ||||| ||| || || || | | ||| || || ||| Sbjct 7711 TCAAATCGTCCAGGCCTCAACAGGGCAGAATCCAGAATGTCTGCCCTATTGGTTGCTGCA 7652 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | ||| ||||| | | ||||| |||||||| || || | | || |||| Sbjct 7651 ATGACGATAATACCAGTGTTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGG 7592 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCACC 11629 || |||||||| ||||||||| || |||| |||| | | |||| | || || Sbjct 7591 GTCTGTTCTCTTTCATCATTTCCTCC---ACCAATGCCAGTGCCTCTTTGCCTTCCAACA 7535 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || |||||| || | | || ||| Sbjct 7534 GCATCAATTTCATCTACAAATACAATGCAGGGAGCATTTTCTTTCGCCTTCTTGAACAGA 7475 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || ||||| || |||||| ||||||||||||||||| ||||| | | | || Sbjct 7474 TCACGAACTCTAGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 7415 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || ||||| ||| || |||||||| || || Sbjct 7414 GAGAAAAATGGAACACCAGCTTCACCAGCAATGGCCTTGGCTAGAAGGGTCTTCCCAGTT 7355 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869 ||||| ||| | ||||| | ||| || || || ||| || ||||| Sbjct 7354 CCTGGAGGACCAACAAGAAGAACACCTTTTGGAATGCGAGCCCCAACGGCAGTGAATCTC 7295 Query 11870 TCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | ||||||||| || || | ||| Sbjct 7294 TCTGGCTTCTTGAGAAACTCAACTACCTC 7266 >seq234 Length=1393318 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||| || || ||||||||||||||| | Sbjct 704053 AAATCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 704112 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | || | || || ||||||||||||||||| || ||||| || Sbjct 704113 TCCAAGACCAGCTCCTCTCTGTCTTCCTACGGCATCAATCTCATCAATAAATACAATGCA 704172 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| | ||| | ||||| | ||| | || ||| || ||||| || || Sbjct 704173 AGGAGCCTTTGCTTTGGCTTTCTCAAACAAATCTCTGACTCTTGATGCTCCCACTCCCAC 704232 Query 11719 AAACATCTCCACAAA 11733 ||||| ||||||||| Sbjct 704233 AAACAACTCCACAAA 704247 >seq676 Length=939917 Score = 93.3 bits (102), Expect = 5e-14 Identities = 177/259 (68%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || |||||| || || |||||||| | || ||| | | | ||| Sbjct 113929 ATCAAGAATTTCAGGGCGATTTGTAGCAGCAATAACAATAACTCCACTGTTACCACTAAA 113988 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || || || || || | |||||||||||||||||| ||| | Sbjct 113989 ACCATCCATTTCAGTAAGCAACTGGTTTAATGTTTGTTCTCTCTCATCGTTTCC------ 114042 Query 11602 ACCACCA--GCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 ||||||| || ||| | |||| | || || ||||| ||||||||||| || || | Sbjct 114043 ACCACCAATGC-CTGTCCCTCTTTGCCTCCCAACAGCATCTATCTCATCAATAAATACTA 114101 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 |||||| ||| | || | | || | ||| | || ||| || || |||| Sbjct 114102 AGCATGGTGAGTTTGCCTTTGCCTTGTTGAACAAATCCCTCACTCTTGAAGCTCCTACAC 114161 Query 11715 CAACAAACATCTCCACAAA 11733 ||||||||||||| | ||| Sbjct 114162 CAACAAACATCTCAATAAA 114180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984709190400