Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq33 100 4e-16 seq700 91.5 2e-13 >seq33 Length=1871104 Score = 100 bits (110), Expect = 4e-16 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||||||||| || ||||| | || || ||||| | || ||||| | || Sbjct 634304 GTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAATCCCGGCATCAACCC 634363 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || || || ||||| |||||||| || ||||||||||| || Sbjct 634364 GCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAATATCCCCTCCACGCA 634423 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || || || | || | |||||| || || || | || | ||| ||| || Sbjct 634424 TGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGA---TCCGTCGATCCATCTCAAGGC 634480 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||||| |||||||| | | ||| || ||||||| |||||| | ||| | | ||||| Sbjct 634481 CCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGAAATAATCGATTCTT 634540 Query 130267 TTCTGATGGATCTTTGATGTA 130287 || | | ||||||||| || Sbjct 634541 CTCGGTCGAATCTTTGATATA 634561 >seq700 Length=103685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||| || ||||| || || || | ||| ||||| | ||||||||| | Sbjct 7627 TCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT 7568 Query 14210 GGCATACCACCCGCACTGCGT---TGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 |||| || ||| | ||| | || || || ||||||||||| | || || Sbjct 7567 CC---ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACA 7511 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGA 14324 || || || |||||| || |||| || | ||| || ||||| |||||| | Sbjct 7510 ATGCAGGGAGCATTTTCTTTCGC--CTTCTTGAACAGATCACGAACTCTAGAGGCACCAA 7453 Query 14325 CACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGAT 14383 |||| ||||||||||| ||||| | | | | | || | || || || || || | Sbjct 7452 CACCAACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCT 7394 Query 14384 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||| || ||||| ||| || ||||||||||| || ||||| Sbjct 7393 TCACCAGCAATGGCCTTGGCTAGAAGGGTCTTCCCAGTTCCTGG 7350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388631829440