Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq700 150 2e-31 >seq700 Length=103685 Score = 150 bits (166), Expect = 2e-31 Identities = 287/417 (69%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || || | | ||| || || || ||||| | |||||| || | | ||||| Sbjct 7682 ATCCAGAATGTCTGCCCTATTGGTTGCTGCAATGACGATAATACCAGTGTTACCCTCAAA 7623 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 7622 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 7566 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | |||| |||| || |||||||| ||||| | || || ||||| Sbjct 7565 ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCA 7506 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || ||||| | || |||| || ||||| || || | ||| || |||||| Sbjct 7505 GGGAGCATTTT--CTTTCGCCTTCTTGAACAGATCACGAACTCTAGAGGCACCAACACCA 7448 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | || | || || || ||| || |||||| Sbjct 7447 ACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACC 7389 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 |||||||| ||| ||||| ||||| || || ||||| ||| | || || |||| Sbjct 7388 AGCAATGGCCTTGGCTAGAAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACACC 7329 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | |||||| || ||| || | ||||||| || | ||| ||||| || || Sbjct 7328 TTTTGGAATGCGAGCCCCAACGGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAAC 7272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216880461760