Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1476 93.3 5e-14 seq1027 89.7 6e-13 seq540 86.0 7e-12 seq361 86.0 7e-12 seq277 82.4 8e-11 seq229 82.4 8e-11 >seq1476 Length=5289327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2155708 TGCTTTCGTTGAGAATCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2155649 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 2155648 TGAGCTACGAAAGCAA 2155633 >seq1027 Length=3367805 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1109186 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1109127 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1109126 TGAGCTACGAAAGC 1109113 >seq540 Length=745784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 174961 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 175020 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 175021 TGAGCTATGAAAGC 175034 >seq361 Length=458566 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 430146 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 430087 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 430086 TGAGCTATGAAAGC 430073 >seq277 Length=750471 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 672294 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 672353 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 672354 CTGAGCTACGAGAGC 672368 >seq229 Length=2021663 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1806743 TGCTTTCATTGAGGGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1806684 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| | |||| || Sbjct 1806683 TGAGCTATGGAAGCTAA 1806667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174794635200