Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq6024 542 3e-149 seq123 143 3e-29 seq101 143 3e-29 seq135 102 1e-16 seq102 89.7 6e-13 >seq6024 Length=163856 Score = 542 bits (600), Expect = 3e-149 Identities = 694/954 (73%), Gaps = 2/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | | || || | | ||| Sbjct 1478 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTA 1420 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| ||||| || || ||||| || |||||||| ||||| || Sbjct 1419 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 1360 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||||| || || || || || | | || | || Sbjct 1359 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 1300 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 1299 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATAC 1240 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | || ||| | | ||| | | ||||||| Sbjct 1239 AATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATG 1180 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||||| |||||||| ||||||||| Sbjct 1179 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 1120 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||||||| | ||||||||| Sbjct 1119 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGC 1060 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| Sbjct 1059 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 1000 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 999 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 940 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || ||||| || | || || ||| | | || || || Sbjct 939 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 880 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 879 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 820 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| || Sbjct 819 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAT 760 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | || |||||| | || || | || || || | || ||||| ||||| Sbjct 759 TCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCT 700 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||||| || |||||||| |||||||| || || | Sbjct 699 TTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTT 640 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| ||||| |||||||||| ||||||||| Sbjct 639 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGT 580 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 579 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 143 bits (158), Expect = 3e-29 Identities = 205/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | || ||| | | ||| ||||| Sbjct 128791 ACCTGTAACGATTCAATATCCTTATGAAAAATTAATCACATCGGAGCGTTTCCGCGGTCG 128732 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| | ||||||||||| Sbjct 128731 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGGGTATGCCCTAT 128672 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACA--AAGAAGAAAGAACTTAGA 19472 ||||||| || || |||||| || |||| |||| |||||| | Sbjct 128671 AGATCTACCTGTTGTTGATTGGCAATTG--GAAACTGACATTCGAAAGAAACGGTTGCTT 128614 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 128613 AATTACAGTATCGATTTTGGAATCTGTATATTTTGTGGCAACTGTGTTGAGTATTGTCCA 128554 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 128553 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 128507 >seq123 Length=745059 Score = 143 bits (158), Expect = 3e-29 Identities = 205/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | || ||| | | ||| ||||| Sbjct 27881 ACCTGTAACGATTCAATATCCTTATGAAAAATTAATCACATCGGAGCGTTTCCGCGGTCG 27940 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| | ||||||||||| Sbjct 27941 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGGGTATGCCCTAT 28000 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACA--AAGAAGAAAGAACTTAGA 19472 ||||||| || || |||||| || |||| |||| |||||| | Sbjct 28001 AGATCTACCTGTTGTTGATTGGCAATTG--GAAACTGACATTCGAAAGAAACGGTTGCTT 28058 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 28059 AATTACAGTATCGATTTTGGAATCTGTATATTTTGTGGCAACTGTGTTGAGTATTGTCCA 28118 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 28119 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 28165 >seq101 Length=511616 Score = 143 bits (158), Expect = 3e-29 Identities = 205/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || |||||||| || ||| | || | || ||| | | ||| ||||| Sbjct 58758 ACCTGTAACGATTCAATATCCTTATGAAAAATTAATCACATCGGAGCGTTTCCGCGGTCG 58699 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| | ||||||||||| Sbjct 58698 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGGGTATGCCCTAT 58639 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACA--AAGAAGAAAGAACTTAGA 19472 ||||||| || || |||||| || |||| |||| |||||| | Sbjct 58638 AGATCTACCTGTTGTTGATTGGCAATTG--GAAACTGACATTCGAAAGAAACGGTTGCTT 58581 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 58580 AATTACAGTATCGATTTTGGAATCTGTATATTTTGTGGCAACTGTGTTGAGTATTGTCCA 58521 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 58520 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 58474 >seq135 Length=947859 Score = 102 bits (112), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||| | || || || |||| |||||||||||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 176626 GCAGAGCACAACATTCTAATGCACCCATT 176654 || ||||| ||||| || ||||||||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 >seq102 Length=2022542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 || || |||||||| |||||||| || |||| ||||| | ||||||| || | Sbjct 1592039 CATTTTTACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCT 1592098 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || | || |||| | | ||| | | ||| | | ||||||||| | | ||| Sbjct 1592099 TATGAGCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGG 1592158 Query 176458 GAACTTAGTTA--CAGACTAGGCATGCGTCCTTGGATCTGT-GTTGCATACTCTGCACC- 176513 || |||||| | || | ||||| |||||||| ||| ||| | || || | || Sbjct 1592159 AAAGTTAGTTTTTCCATCTGCGTATGCGCCCTTGGAT-TGTAGTTACGTATTCAACTCCT 1592217 Query 176514 AGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGA 176573 | ||| | || | | |||||| | |||||||| | ||||||||| || | ||| Sbjct 1592218 ATTATA-GTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGA 1592276 Query 176574 TGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGC 176627 |||||||||||| || || || |||| |||||| ||||| ||| ||| ||||| Sbjct 1592277 TGGTATGCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGC 1592330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603448956871680