Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq169 105 5e-18 seq167 96.9 2e-15 seq229 89.7 4e-13 seq4665 87.8 1e-12 seq1027 82.4 5e-11 seq100 82.4 5e-11 >seq169 Length=810068 Score = 105 bits (116), Expect = 5e-18 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||||| || || || ||| || | || || |||||| | Sbjct 364159 ATGCAGATTTTTGTGAAGACTCTCACCGGCAAGACTATAACTTTGGAGGTGGAAAGCTCA 364218 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 364219 GATACAATTGATAAT--GTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCACCTGACC 364276 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| ||||| ||||| |||||||| || | || || | || | |||| ||||||| Sbjct 364277 AGCAGCGGTTGATTTTCGCCGGAAAGCAGCTAGAGGATGGCCGGACTCTTG-CCGATTAT 364335 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||||||||| |||| ||||| ||||| Sbjct 364336 AACATCCAAAAAGAATCCACTCTGCATCTGGTT 364368 >seq167 Length=3484751 Score = 96.9 bits (106), Expect = 2e-15 Identities = 169/241 (70%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 27779 ACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATG 27838 ||||||| |||||||| ||||||||||| |||||||| || || || |||| | Sbjct 1287704 ACAATAG----ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTTGAGG 1287759 Query 27839 TCGAAAGCACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGT 27896 | |||||| ||| || || ||||| |||||| ||| || |||||||| || | Sbjct 1287760 TGGAAAGCTCCGACACCATTGACAAT--GTCAAAGCAAAGATCCAGGACAAAGAGGGAAT 1287817 Query 27897 TCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCT 27955 ||| || ||||| || | || ||||| || || ||| | || |||| || | || Sbjct 1287818 TCCCCCAGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTCGAGGACGGGCGTACACT 1287877 Query 27956 TGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCG 28015 || | || ||||| |||||||| || ||| | |||||||| |||| ||| | || | Sbjct 1287878 TG-CAGACTACAATATCCAAAAGGAATCCACACTCCATTTGGTGCTGCGATTGAGGGGTG 1287936 Query 28016 G 28016 | Sbjct 1287937 G 1287937 >seq229 Length=2021663 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || ||||| || ||| ||| | || ||||||||| | Sbjct 545051 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACTATCACATTGGAAGTCGAAAGCTCA 544992 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| |||||| |||||||| || | ||| || | Sbjct 544991 GACACCATTGATAAT--GTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCGCCAGACC 544934 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || ||| |||| || | |||| | | | || |||| Sbjct 544933 AGCAGAGGCTGATCTTTGCTGGTAAGCAACTGGAGGATGGCCGCACCCTTGCTGACTACA 544874 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | |||||||| | ||| | || || ||| Sbjct 544873 ACATCCAGAAGGAGTCCACCCTCCATTTGGTCCTTCGTCTTCGCGGTGGC 544824 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| ||||| || || || |||| || || ||| | Sbjct 545735 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCT 545676 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||||||||| | || || | Sbjct 545675 GACACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCACCAGACC 545618 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || || ||||| || |||| || | |||| | | | || |||| Sbjct 545617 AGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTTGCAGACTACA 545558 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| |||| ||||| | ||| | ||||| ||| Sbjct 545557 ACATCCAGAAGGAATCCACCCTGCACTTGGTCCTTCGTCTTCGTGGTGGC 545508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||| ||||| || || || |||| || || ||| | Sbjct 547634 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCT 547575 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||||||||| | || || | Sbjct 547574 GACACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCACCAGACC 547517 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || || ||||| || |||| || | |||| | | | || |||| Sbjct 547516 AGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTTGCAGACTACA 547457 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| |||| ||||| | ||| | ||||| ||| Sbjct 547456 ACATCCAGAAGGAATCCACCCTGCACTTGGTCCTTCGTCTTCGTGGTGGC 547407 >seq4665 Length=296 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || ||||| || ||| ||| | || ||||||||| | Sbjct 88 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACTATCACATTGGAAGTCGAAAGCTCA 147 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| |||||| |||||||| || | ||| || | Sbjct 148 GACACCATTGATAAT--GTCAAGGCAAAAATTCAGGACAAAGAGGGGATCCCGCCAGACC 205 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || ||| |||| || | |||| | | | || |||| Sbjct 206 AGCAGAGGCTGATCTTTGCTGGTAAGCAACTGGAGGATGGCCGCACCCTTGCTGACTACA 265 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || ||| ||| | |||||||| Sbjct 266 ACATCCAGAAGGAGTCCACCCTCCATTTGGT 296 >seq1027 Length=3367805 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/223 (70%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || |||||||||||| || ||| |||| || ||||| | Sbjct 416835 ATGCAGATCTTTGTGAAGACACTTACTGGGAAAACCATCACACTTGAGGTGGAAAGTTCA 416776 Query 27850 GA--CGATGTACAATCGGTCAAA-CAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || ||| | | | || || || ||||| | || || Sbjct 416775 GATACTATCGACAAT--GTGAAAGCCAGATCCAG--GATAAGGAAGGAATCCCACCTGAC 416720 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 |||||| || | || ||||| ||||| ||| | || || | |||| |||| | ||||| Sbjct 416719 CAGCAAAGGCTTATCTTTGCTGGAAAGCAACTTGAGGATGGCCGCACACTTG-CTGATTA 416661 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008 |||||||||||| || ||| | || ||||| | |||||| Sbjct 416660 CAACATCCAAAAGGAATCCACCCTCCACTTGGTGCTTCGTTTG 416618 >seq100 Length=1654266 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || |||| || |||||| | Sbjct 546799 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 546858 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| || ||| ||||| ||||| ||||| |||| || | Sbjct 546859 GACACTATTGACAA--CGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATC 546916 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| ||||| || | || | | | | || || | Sbjct 546917 AGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATA 546976 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||| ||||| ||| || | || |||||| | ||| Sbjct 546977 ACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGT 547014 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || |||| || |||||| | Sbjct 553868 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 553927 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| || ||| ||||| ||||| ||||| |||| || | Sbjct 553928 GACACTATTGACAA--CGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATC 553985 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| ||||| || | || | | | | || || | Sbjct 553986 AGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATA 554045 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||| ||||| ||| || | || |||||| | ||| Sbjct 554046 ACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGT 554083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355836273472248