Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq100 116 3e-21 seq167 113 4e-20 seq1476 104 2e-17 seq596 84.2 2e-11 seq1027 82.4 7e-11 >seq100 Length=1654266 Score = 116 bits (128), Expect = 3e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||||| |||| |||||| || || ||| ||| || || || || || || Sbjct 547257 CATGCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 547198 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || | || |||||||||||||| ||||| ||||| | |||||| || | Sbjct 547197 GGCAAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGG 547138 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | || ||| |||||| ||| || ||| | | | | || || ||| Sbjct 547137 GGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCT--- 547081 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| |||| ||||| | || || || || || || |||||||||||||| Sbjct 547080 CTCCACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 547027 Score = 116 bits (128), Expect = 3e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||||| |||| |||||| || || ||| ||| || || || || || || Sbjct 554326 CATGCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 554267 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || | || |||||||||||||| ||||| ||||| | |||||| || | Sbjct 554266 GGCAAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGG 554207 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | || ||| |||||| ||| || ||| | | | | || || ||| Sbjct 554206 GGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCT--- 554150 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||| |||| ||||| | || || || || || || |||||||||||||| Sbjct 554149 CTCCACTTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 554096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| || || || || || || |||||| Sbjct 547481 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCA 547422 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || || | ||||||||| | ||| Sbjct 547421 AGGGTGCGGCCATCCTCGAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 547362 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| | | | |||||| ||| || Sbjct 547361 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATTGTATCGGAGCTCTCAACT 547302 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||| ||||| Sbjct 547301 TCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 547255 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| || || || || || || |||||| Sbjct 554550 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCA 554491 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || || | ||||||||| | ||| Sbjct 554490 AGGGTGCGGCCATCCTCGAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 554431 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| | | | |||||| ||| || Sbjct 554430 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATTGTATCGGAGCTCTCAACT 554371 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||| ||||| Sbjct 554370 TCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 554324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| || || || || || || |||||| Sbjct 554778 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCA 554719 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || || | ||||||||| | ||| Sbjct 554718 AGGGTGCGGCCATCCTCGAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 554659 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| | | | || ||| ||| || Sbjct 554658 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATTGTGTCGGAGCTCTCAACT 554599 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||| ||||| Sbjct 554598 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 554552 >seq167 Length=3484751 Score = 113 bits (124), Expect = 4e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || || || || || | ||||||||| || ||| || ||||| || Sbjct 1287950 AAATATCTGCATACCACCCCTCAATCGCAGCACCAAATGGAGTGTGGATTCCTTTTGGAT 1287891 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| || || |||||||| || |||| || || || || || ||||| ||||| | ||| Sbjct 1287890 ATTGTAGTCTGCAAGTGTACGCCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGCCTCTG 1287831 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | |||||||||| ||| || ||||| | | | || || Sbjct 1287830 CTGGTCTGGGGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTGACATTGTCAATGGTGTC 1287771 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || | ||||| | || || || || ||||| |||||||||||||| Sbjct 1287770 GGAGCTTTCCACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 1287711 Query 39285 CT 39286 || Sbjct 1287710 CT 1287709 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | |||| ||| || || || || || |||||||||||||| Sbjct 2202497 CCTCCTCTTAAACGGAGGACCAGATGCAGAGTCGATTCCTTCTGGATATTATAATCGGCG 2202556 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | |||| || || || || || || || || | ||||||||||| | || Sbjct 2202557 AGTGTTCTTCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCTGGTGGA 2202616 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | || |||||| ||| || |||| ||| | | | |||||| |||||| Sbjct 2202617 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATAGTATCGGAGCTCTCCAC 2202675 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | ||||| ||||| ||||| || ||||| ||||| Sbjct 2202676 CTCTAGCGTTATCGTCTTTCCGGTCAGGGTTTTCACGAAGATCTGCAT 2202723 >seq1476 Length=5289327 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||| |||||||| | || || | || || |||||| Sbjct 643458 TGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGT 643517 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| ||||||||||||||||| | || | | |||||||| |||||| Sbjct 643518 TTCCCGGCAAAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTG 643577 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| ||| | | | || ||||| ||| || || | |||||| | || || || Sbjct 643578 GCTTTGA-CGTTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGT 643636 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || ||||| ||||| ||||||| || Sbjct 643637 GAGGGTCTTAACGAAGATCTGCATCTGTA 643665 >seq596 Length=4721113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| ||||| | ||||| || || || ||| || || || || || || || Sbjct 1300449 CCACCTCTCAAGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCG 1300508 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | |||| || |||||||| || || || || |||||||||||||| | || Sbjct 1300509 AGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 1300568 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || ||||| ||| || ||| | | | | |||||| ||||| || Sbjct 1300569 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTATCGGAAGACTCAACC 1300628 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||| ||||||||| Sbjct 1300629 TCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 1300679 >seq1027 Length=3367805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| |||||| || || ||||| || ||| | || || | Sbjct 416165 GCGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATGTTATAGTCAGCATGAGTACGACC 416224 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| ||||||||||| || ||||| || | | ||||||||| | ||| | || ||| || Sbjct 416225 GTCCTCAAGCTGTTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTT 416284 Query 39189 GTC 39191 ||| Sbjct 416285 GTC 416287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429514063835912