Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1476 140 2e-28 seq167 109 4e-19 seq41 107 1e-18 seq1027 102 6e-17 seq169 100 2e-16 seq707 95.1 8e-15 seq229 93.3 3e-14 >seq1476 Length=5289327 Score = 140 bits (154), Expect = 2e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| |||||||| || || || ||||||||||| || || || Sbjct 643660 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACTATCACTCTCGAGGTAGAGAGCAGC 643601 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||||||| | |||||||| || Sbjct 643600 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCGCCAGACCAG 643541 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| ||||| || ||||| | || ||||| | ||||||||| Sbjct 643540 CAGCGTCTTATCTTTGCCGGGAAACAGCTCGAAGATGGCCGTACTTTGGCCGATTACAAT 643481 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 643480 ATCCAGAAGGAGTCCAC 643464 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || ||||| || ||||| || || ||||| || Sbjct 642976 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCAGT 642917 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||||| ||||| || || | || ||||| || Sbjct 642916 GACACTATTGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 642857 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||||||||||| | || ||||| | ||||||||| Sbjct 642856 CAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGATTACAAT 642797 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 642796 ATTCAGAAGGAATCCAC 642780 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||| | || || || || ||||| ||||| ||||| || Sbjct 643204 ATGCAGATTTTCGTTAAGACCTTGACTGGGAAGACCATCACCCTCGAGGTTGAGAGCAGC 643145 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||||| ||||| || || | || ||||| || Sbjct 643144 GACACTATTGACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 643085 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| |||||||| || |||| || || || | |||||| ||| Sbjct 643084 CAGAGGCTGATCTTCGCCGGAAAACAACTAGAGGACGGGCGTACCTTGGCCGATTATAAC 643025 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 643024 ATTCAGAAGGAGTCTAC 643008 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || || ||||| || ||||| | Sbjct 643432 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACTATTACTCTGGAGGTTGAAAGTAGC 643373 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || || || ||||| | || |||||||| Sbjct 643372 GACACCATCGATAATGTCAAGGCAAAGA-TTCAGGATAAGGAAGGAATTCCCCCAGATCA 643314 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || ||||| ||||| || || |||| || || || | ||||||||| Sbjct 643313 GCAGAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGGCGTACCTTGGCCGATTACAA 643254 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 643253 CATTCAGAAGGAGTCCAC 643236 >seq167 Length=3484751 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| || || ||||| || || ||||| ||||| | | Sbjct 1288622 AATGCAGATTTTTGTCAAAACCCTGACAGGGAAAACCATTACCCTCGAGGTTGAGAGCTC 1288681 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | ||||| ||||| || ||| | || || || | Sbjct 1288682 TGACACAATTGACAATGTGAAGGC-TAAAATCCAGGACAAGGAGGGTATTCCCCCGGACC 1288740 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || || || ||||| || |||||||| ||||| | ||| || | | || || | Sbjct 1288741 AACAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGACGAACCCTTGCAGACTATA 1288800 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || ||||||||||| Sbjct 1288801 ATATCCAGAAAGAGTCCAC 1288819 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || || |||||||| || || | | Sbjct 2203179 ATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACTATTACTCTCGAGGTCGAGAGCTCC 2203120 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || || || ||||| | || || |||||| Sbjct 2203119 GATACAATTGATAACGTCAAGGCCAAGATCCAAGATAAGGAAGGAATTCCACCGGATCAA 2203060 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || |||||||| || || ||||| | ||||| |||| |||||||||| Sbjct 2203059 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGCACATTAGCCGATTACAAC 2203000 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 2202999 ATCCAGAAGGAGTCAACA 2202982 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || | || || ||||| || ||||| ||||| || | | Sbjct 2202951 ATGCAGATCTTCGTTAAGACTTTGACAGGCAAAACCATTACTCTTGAAGTCGAGAGCTCT 2202892 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| ||||| | || || || || Sbjct 2202891 GATACCATCGATAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGAATTCCACCGGACCA 2202833 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || |||||||| ||||||| | | || | | |||||| || Sbjct 2202832 GCAGAGATTGATCTTCGCTGGAAAACAACTCGAAGACGGAAGAACCCTTGCCGATTATAA 2202773 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || |||||| | ||||| ||| | | ||||||||||| Sbjct 2202772 TATTCAGAAGGAATCCACACTGCATTTGGTTCTCCGTTTGCGAGGAGG 2202725 >seq41 Length=2736928 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || ||||| || || || ||||| || Sbjct 677469 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCT 677410 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| ||||| | || ||||| Sbjct 677409 TCTGACACCATCGATAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGAATCCCTCCAGA 677351 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || ||||| || || ||||| || | |||||| | | ||| || Sbjct 677350 CCAGCAGCGACTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTA 677291 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 677290 CAACATCCAGAAGGAATCCAC 677270 >seq1027 Length=3367805 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || || ||| | ||||| || | | Sbjct 416380 ATGCAGATTTTTGTGAAGACCCTCACAGGGAAGACCATTACTTTGGAAGTAGAGAGCTCT 416321 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | |||| || ||||| || || | || ||||| || Sbjct 416320 GACACCATTGACAATGTTAAAGCCAAAA-TTCAAGACAAGGAGGGCATCCCCCCAGACCA 416262 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| || || |||| || ||| | || || || Sbjct 416261 GCAGAGGTTGATTTTTGCAGGGAAACAGCTTGAGGACGGTCGTACTCATGCTGACTATAA 416202 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 416201 CATTCAGAAAGAGTCCAC 416184 >seq169 Length=810068 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || || ||| | || || || | | Sbjct 364159 ATGCAGATTTTTGTGAAGACTCTCACCGGCAAGACTATAACTTTGGAGGTGGAAAGCTCA 364218 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||||| ||||| |||||| | || || || || Sbjct 364219 GATACAATTGATAATGTCAAAGC-CAAAATTCAAGACAAGGAAGGTATTCCACCTGACCA 364277 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || || || || || | || ||| | | |||||| || Sbjct 364278 GCAGCGGTTGATTTTCGCCGGAAAGCAGCTAGAGGATGGCCGGACTCTTGCCGATTATAA 364337 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| ||||| | ||| | ||| | || | || || ||| Sbjct 364338 CATCCAAAAAGAATCCACTCTGCATCTGGTTCTCCGGCTCCGCGGTGGA 364386 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||||||||||||| || ||||| || |||||||| || || | | Sbjct 363931 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAAACTATAACTCTCGAGGTCGAGAGCTCC 363990 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || ||| || || ||||| | || || || || Sbjct 363991 GACACAATCGACAACGTTAAGGC-TAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCA 364049 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| || || || || || | || || | | ||||||||| Sbjct 364050 GCAAAGGCTGATTTTCGCCGGTAAGCAGCTTGAGGATGGCCGTACCCTCGCCGATTACAA 364109 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || ||||| | ||| | ||| | | || ||||||| Sbjct 364110 TATACAAAAGGAATCCACTCTTCATCTTGTTCTTCGTCTGAGAGGAGG 364157 >seq707 Length=3952773 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || ||||| || || || ||||| || Sbjct 1981948 AAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACGATAACCCTAGAGGTTGAGTCT 1981889 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| | || ||| | || | || || ||||| ||||| | || ||||| Sbjct 1981888 TCTGATACTATCGATAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCAGA 1981830 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || ||||| || || || || || | |||||| | | ||| || Sbjct 1981829 CCAGCAGCGACTGATCTTCGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCCGACTA 1981770 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || ||||| Sbjct 1981769 CAATATCCAGAAGGAATCCAC 1981749 >seq229 Length=2021663 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || || || || | | Sbjct 547862 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCA 547803 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | ||||||| |||||||| || | || || || || Sbjct 547802 GACACCATTGACAATGTTAAGGC-AAAAATTCAGGACAAAGAGGGGATCCCACCTGACCA 547744 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || || || || | |||||| | | || ||||| Sbjct 547743 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGGCGCACTCTTGCTGACTACAA 547684 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 547683 TATTCAGAAGGAGTCCAC 547666 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| ||||| || ||||| || || ||||| | | Sbjct 545735 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCT 545676 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || ||||| || Sbjct 545675 GACACCATTGACAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGAATCCCACCAGACCA 545617 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || |||||||| | ||||| | | || ||||| Sbjct 545616 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTTGCAGACTACAA 545557 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 545556 CATCCAGAAGGAATCCAC 545539 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| ||||| || ||||| || || ||||| | | Sbjct 547634 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCT 547575 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || ||||| || Sbjct 547574 GACACCATTGACAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGAATCCCACCAGACCA 547516 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || |||||||| | ||||| | | || ||||| Sbjct 547515 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTTGCAGACTACAA 547456 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 547455 CATCCAGAAGGAATCCAC 547438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337984784180192