Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1476 86.0 5e-12 >seq1476 Length=5289327 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||| | ||| ||||| || ||||||||||||||||||| |||| | |||||| Sbjct 642767 CACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTC 642826 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || ||| || || || | || ||||| || |||||| || | ||| || ||||| Sbjct 642827 CAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTG 642886 Query 101149 AATTTTTTGTTTCAC 101163 ||||||| ||||| Sbjct 642887 AATTTTTGCCTTCAC 642901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409630723728216