Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq33 201 1e-46 seq148 82.4 7e-11 >seq33 Length=1871104 Score = 201 bits (222), Expect = 1e-46 Identities = 547/828 (66%), Gaps = 17/828 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||||| ||||||||||| || |||| || || || ||||| ||||||| Sbjct 634014 ACTCTTTTTTCAAAGAAATTAGTCTTTCCTTGCAATGAGATCAGCTCCATCCAATCAAAA 634073 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || ||||| | ||||| || | ||| || || | | ||| | ||||| ||| Sbjct 634074 GGGTTAGTCACATTGTATATCTTCCCGCACCCAAGCGCACCCAACAACCTATCAGCCACA 634133 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || |||||||||||||| || || | ||| || || | || | || ||| ||||| Sbjct 634134 AACTCAATATACTGGCTCATCAGCTCTCGGTTCATCCCTACCAAAGCGCA-AGGAAGCGC 634192 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| || || || || || | ||| | || | || Sbjct 634193 GTCGCATACAAACTCCCTCTCAATTTCCACTGCATCACGCACTATTCCCTTCACACGCTC 634252 Query 4511 ----TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCA 4566 || | | || | || || | | | | || ||||| ||||| || |||| Sbjct 634253 CTCATTCAACTTCTTCTTCAACAAACTGT----AGAGCAAGCACGCGAAATCGCAGTGCA 634308 Query 4567 AACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 |||| ||||||| || | |||| |||||||| || |||||||| ||||| || || | | Sbjct 634309 AACCCTCGTCTC-GCGAGATCAACTCGTTAGAGAAAGTTAATCCCGGCATCAACCCGCGC 634367 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 ||||| ||||||||||| ||| ||| ||||| || ||||| || || ||| ||| Sbjct 634368 TTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAATATCCCCTCCACGCATGCA 634427 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 || || || | || |||| || | | ||| |||||| | || ||||| Sbjct 634428 AAAGCGACAAGTCTCTCAGCGAAAGACTCCGATCCGTCG---ATCCATCTCAAGGCCCAC 634484 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA 4805 | ||| ||||| || || |||| || | || |||| ||||||| | | || || Sbjct 634485 TCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGAAATAATCGATTCTTCTCG 634544 Query 4806 AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | |||| |||||||| || | || || |||||||| ||||| || ||||| || Sbjct 634545 GTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATACATCTCAGAGTGAATATTCTCA 634604 Query 4866 ATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || || || ||||| || || |||||| | ||| || | ||||| || || || ||| Sbjct 634605 ATCGCGATTTGAAAGCCATAGAAAGCA-CGAGCCTCAGAGACTTGGACCTCCTTCATAAA 634663 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 | | | | |||||| || || || ||| ||| ||||| || || | ||||| Sbjct 634664 ACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGACATG 634723 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 |||||| |||| | || || | | || | ||| ||| | | ||||| || || Sbjct 634724 AGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATTGGCGGAGATCTTGAGATAG 634783 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||| || || || |||||||||| || || || ||||| |||||||| Sbjct 634784 ATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGTACAT 634831 >seq148 Length=2349003 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| |||||||||| ||||| |||||| ||| || || || || || ||||| Sbjct 546851 CATGCAAAGTCACAATGCAGGCCTTCATCTCTGGAAATTAGCTCATTTGAGAATGTTAAA 546792 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| || || |||||||||||||| || || || Sbjct 546791 CCAGGCATCAAGCCCCTCTTTTTAAGCCAGAAAATGGC 546754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427018247085992