Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33 201 2e-46 seq241 122 1e-22 seq304 107 3e-18 >seq33 Length=1871104 Score = 201 bits (222), Expect = 2e-46 Identities = 405/599 (68%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || | ||| || |||| || || |||||||| || || Sbjct 634287 AAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTT 634346 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 | || ||||| | || || ||||| ||||||||||| || ||| |||||| || Sbjct 634347 AATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAA 634406 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| || || ||| ||||| ||| ||||||||| || || | || || | || Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAA--GACTCCGATCCGT 634464 Query 48318 --ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | ||||| |||||||| || |||||||| | || || || || | Sbjct 634465 CGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGT 634524 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | || || || | |||||| | ||||| || | |||||||||||||| Sbjct 634525 GAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATACA 634584 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || ||||||||||| ||||| || || ||||| || || ||| | || || | || Sbjct 634585 TCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAGA 634644 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || |||||| | ||| || | || | ||| || || || |||||| || | Sbjct 634645 CTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGG 634704 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| || || | ||||| || || | ||| || | ||| || || | ||| | Sbjct 634705 CAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATT 634764 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 || ||||| |||| ||| || || || || |||||||| || ||||| ||||| | Sbjct 634765 GGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCT 634824 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 | ||||| | |||||| | ||||||||||||||| || |||| || ||| ||| Sbjct 634825 TGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTTT 634883 >seq241 Length=1151104 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | || | || |||| |||| | |||| | |||||||||||| || Sbjct 845255 CCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCCA 845314 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||| ||| |||| ||||| ||| | || ||||||||| | || Sbjct 845315 TTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGAA 845374 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || | ||| || | ||| || |||||| ||||| | || Sbjct 845375 AGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAATT 845434 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || ||||| ||||| | ||||||||||||| Sbjct 845435 CCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| || |||||| |||| |||| ||||| |||||| ||||| | || || Sbjct 844742 TTCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTGGGGCAAAATAAAGA 844801 Query 77984 CCAGTCACCATCTTCCTTA--ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 |||| | ||| ||| |||| || ||||||||||||||| ||||| |||||| Sbjct 844802 CCAGCTGCTATCA--CTTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAAGAGCATAG 844859 Query 78042 AATAGATCTCGGGTTCTATGTTCTTC 78067 |||| ||||| | || | ||||||| Sbjct 844860 AATAAATCTCTAGCTCGACGTTCTTC 844885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | || || | |||||||| ||||| | ||| | | | | Sbjct 845567 GTTCCAGCATTAAAAAGGGTAGGGGTAGCATGCGTGAACCAACGCTGAGACATCAAGTGG 845626 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||| || || || ||||| || | || || || || || | ||||||| Sbjct 845627 TAAGTTTCAAAGGCAGAGTCAATGTCATCTTTGTAGATGCCAACAGCAACCCTCATCAAC 845686 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| || |||||||| || |||| || | ||||| | ||| || || || | | Sbjct 845687 ATATGTTGTGGTCTTTCTACAATCTTCCCATCAACCTTCAAAAGGTAGGACTTCTCAAGA 845746 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || || || ||||| || | || ||||||||| || || || || Sbjct 845747 GTCTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCATAGATGAT 845793 >seq304 Length=2135540 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | ||||||||||| |||||| Sbjct 1419054 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGGAACAATACCA 1419113 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||||||| |||||| || || | || ||||| || || || Sbjct 1419114 TTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGAG 1419173 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || || || ||||| || || Sbjct 1419174 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGTATCATATATG 1419233 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 1419234 CCTTCAATACTATCATCTTTCATG 1419257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694616491439360