Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq33 168 1e-36 seq241 149 9e-31 seq304 125 1e-23 >seq33 Length=1871104 Score = 168 bits (186), Expect = 1e-36 Identities = 398/599 (66%), Gaps = 4/599 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || || ||||| || || | || || |||| || || |||||||| || || Sbjct 634287 AAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTT 634346 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | || ||||| | || |||||||| ||||||||||| || ||| |||||| || Sbjct 634347 AATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAA 634406 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTAT 46804 ||||| || || || || || |||||||||||||| || | ||| ||| | Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC--CGT 634464 Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| || ||||| ||||||||||| |||||||| | || || || || | Sbjct 634465 CGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGT 634524 Query 46865 TAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACA 46924 ||| | || || || |||||| | ||| || || | |||||||||||||| Sbjct 634525 GAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATACA 634584 Query 46925 TTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 46984 | || || ||||| || ||||| || || ||||| || || ||| | || |||| | Sbjct 634585 TCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAGA 634644 Query 46985 TCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 || ||||| | ||| || | | | ||| || || || |||||| || | Sbjct 634645 CTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGG 634704 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGT 47104 |||| || || | ||||| || || | ||| ||||||| || || | ||| | Sbjct 634705 CAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATT 634764 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 || ||||| |||| ||| || || || || ||||| || || ||||| ||||| | Sbjct 634765 GGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCT 634824 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTT 47223 | ||||| | |||||| | | |||||||| || || || |||| || ||| ||| Sbjct 634825 TGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAATCGATCTGGGTTT 634883 >seq241 Length=1151104 Score = 149 bits (164), Expect = 9e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | || | ||||||| |||| | |||| | ||||||||||||||| Sbjct 845255 CCTCCATGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATTGGAATAATGCCA 845314 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| |||| ||||| ||| |||||||||||| | ||| Sbjct 845315 TTGGAAGTCCCATTTGTCCCACAAATGTAACTGCCAGTAGCACGAATATTATGGACAGAA 845374 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 ||||| |||||||| || | || || | |||||| |||||| || ||| | || Sbjct 845375 AGGCCAATTCCTCCAGCTAACTTGCTAATAACAGCACACTCTTTCAAAGTATCAAAAATT 845434 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || |||||||| ||||| | ||||||||||||| Sbjct 845435 CCCTCAATGCTATCATCTTTCATGCACACAAGAAAACAGCTA 845476 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || |||||| |||| ||||||||||| |||||| || || | || || Sbjct 844742 TTCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTGGGGCAAAATAAAGA 844801 Query 76579 CCACTCACCATCTTCCTTA--ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 76636 ||| | ||| ||| || | || ||||||||||||||| ||||| |||||| Sbjct 844802 CCAGCTGCTATCA--CTTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAAGAGCATAG 844859 Query 76637 AATAGATCTCGGGTTCTACGTTCTTC 76662 |||| ||||| | || ||||||||| Sbjct 844860 AATAAATCTCTAGCTCGACGTTCTTC 844885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||||| | ||||| |||||||| | ||| | | | | Sbjct 845567 GTTCCAGCATTAAAAAGGGTAGGGGTAGCATGCGTGAACCAACGCTGAGACATCAAGTGG 845626 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||| | | || || || || | || || ||||| || | ||||||| Sbjct 845627 TAAGTTTCAAAGGCAGAGTCAATGTCATCTTTGTAGATGCCAACAGCAACCCTCATCAAC 845686 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| || |||| ||||||| |||| || | ||||| | ||| || || || | | Sbjct 845687 ATATGTTGTGGTCTTTCTACAATCTTCCCATCAACCTTCAAAAGGTAGGACTTCTCAAGA 845746 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || || ||||| || | || ||||||||| || || || || Sbjct 845747 GTCTTGAATCCAAAGTAATCATAGTCAAAGTCTCTGTCATAGATGAT 845793 >seq304 Length=2135540 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | ||||||||||| ||| || Sbjct 1419054 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGGAACAATACCA 1419113 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||| || || |||||||| || || ||| Sbjct 1419114 TTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGAG 1419173 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| || || || ||||| ||| Sbjct 1419174 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAAAGTATCATATATG 1419233 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 1419234 CCTTCAATACTATCATCTTTCATG 1419257 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| ||||||||||||||| | | ||| | | || Sbjct 1419391 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGA 1419450 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| ||| || ||||| | ||| |||||||| ||||| || | ||||| Sbjct 1419451 TATGTTTTGATAGCTGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATCAG 1419509 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 ||| |||||||| | |||||| ||| | || | ||| || | ||| || |||||| Sbjct 1419510 CATGTGCTGAGGCCTCTCTACA-ACTTTTCCTTGAACTTTTAAGAGGTAGGACCTTTCCA 1419568 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || || ||||| || | || |||||||| || ||||| || Sbjct 1419569 GAGTCTTGAACCCAAAGTAATCATAGTCAAAGTCTCGATCATAAATGAT 1419617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712880716039680