Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6024 682 0.0 seq662 104 3e-17 seq102 96.9 4e-15 seq214 93.3 5e-14 seq169 91.5 2e-13 seq823 82.4 9e-11 >seq6024 Length=163856 Score = 682 bits (756), Expect = 0.0 Identities = 748/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| | ||||| ||||||||| | ||||| || || | || |||||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || ||| | ||| | ||||| |||| || || | || ||| | ||||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| ||||||| || | ||||||||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || |||||||| || ||||| |||| || || || | || || || || || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| ||||| | ||||| ||| | || || || |||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | || ||| | |||| || || ||||||||||||||||||||| | || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| |||||||| |||||||| |||||| ||| || |||||||| ||||| || || Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || ||||||| | |||||||| ||| |||||||||||| || || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| |||| |||| ||||| || |||||||||||||| |||||||| Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | || || |||||||| ||||| ||||| || |||||||| ||||| || Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| |||| || || | | | | || | |||||||| || ||| || || | | Sbjct 913 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| ||||||||||| ||||| || || || || || || |||||||| || |||| Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 | || |||||||||| |||||| || ||||||||||||||| | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 |||||||||| || || || || ||||| |||||| | ||| ||||||||||||| || | Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| |||||||| || |||||||| ||| | ||||| ||||||||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 ||||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCT 184182 |||| ||||||||||| ||||| |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 497 bits (550), Expect = 1e-135 Identities = 714/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || ||||| || || | || | Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| || ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || ||||| ||| || | || || ||| | || | | || || ||| Sbjct 37378 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCTGCA 37436 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | |||||| | | |||| |||||||| || | Sbjct 37437 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCA 37496 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||| ||| | | || |||| ||| | || || | |||| |||||| || |||||| Sbjct 37497 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCAC 37556 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGT 186329 || || || | || |||||||| ||| | || || |||||| | ||| ||| Sbjct 37557 GGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAA 37616 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||||||| Sbjct 37617 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTC 37676 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || ||||| ||||| || || || ||||| || ||||| Sbjct 37677 CTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCT 37736 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || ||||||| || || ||||||||| |||| ||||| || Sbjct 37737 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCAT 37796 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || || | | |||| ||||||||| | || || ||||||| |||| Sbjct 37797 ATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACT 37856 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 37857 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 37916 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| ||||| || || ||| | || ||||| || ||||| Sbjct 37917 ACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 37976 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 37977 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 38036 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||||| || || ||||| |||||| Sbjct 38037 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGAC 38096 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||||| | | ||||| || |||||||| || ||||| ||||| || || Sbjct 38097 TTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAA 38156 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | ||||| |||||||| | ||||| || |||||| Sbjct 38157 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 38216 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 38217 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq662 Length=431101 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| ||| || || ||||||||||| ||||| ||| |||| | |||||| | Sbjct 315078 CTGATGATACATACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTT 315137 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | ||||| ||||| || || ||||||||||| || | | ||||| || ||||| | Sbjct 315138 GCAGGGCTGGGGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGT 315197 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCT 171168 | ||| || ||||| ||||| |||| || || |||| | ||||| || || | Sbjct 315198 CTGATGGTTCGTTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTT 315257 Query 171169 CATATCCTACAAGTGATTGTGTAAT 171193 |||| || || |||||||| || Sbjct 315258 CATACCCAACTTCAGATTGTGTGAT 315282 >seq102 Length=2022542 Score = 96.9 bits (106), Expect = 4e-15 Identities = 231/346 (67%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 183368 GAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCT 183427 |||| || || || | |||||| || ||||| ||| || || | | || || | Sbjct 1591986 GAAATAATATTATTTATGGTGCCATTATTCCTACTTTTGCAGCTATAGATTTGCATTTTT 1592045 Query 183428 ATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAAC 183487 | || || |||||||| ||| | ||||| || | || || | |||| |||| | | Sbjct 1592046 ACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCTTATGAGC 1592105 Query 183488 TCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATT-- 183545 | | || | | ||| | |||| || || |||||||||| | ||||| || | Sbjct 1592106 TAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGGAAAGTTA 1592165 Query 183546 GTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT-GTTGCTTATAGCGCACCTGTTGCTG 183604 || || || ||| ||||||| |||||||| ||| ||| | ||| | ||| || | Sbjct 1592166 GTTTTTCCATCTGCGTATGCGCCCTTGGAT-TGTAGTTACGTATTCAACTCCTATTATAG 1592224 Query 183605 CTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGC 183664 ||| || |||| ||| || ||||||| | |||||||| ||| ||||||||||| Sbjct 1592225 TTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATGGTATGC 1592284 Query 183665 CCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGC 183710 | || || ||| | | || || ||| |||| ||| || ||||| Sbjct 1592285 CTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGC 1592330 >seq214 Length=442246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/199 (72%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 186385 TATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCG 186444 ||||||| || || ||||| || ||||| ||||| || || || ||||| || | Sbjct 75045 TATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT-TTTGGTGTAG 75103 Query 186445 CAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCAT 186504 |||| || ||| ||||| | | || ||||||| || | ||||| |||| |||| Sbjct 75104 CAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTGC----TGAACCCAT 75159 Query 186505 TCCACATGATGGGTGTAGC-AG-GTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGG 186562 | || || ||||| || || || |||| | |||| ||||||| | || || ||||| Sbjct 75160 TTCATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGG 75217 Query 186563 TGTTACTGTAGAAAATACT 186581 || |||||||||||||||| Sbjct 75218 TGGTACTGTAGAAAATACT 75236 >seq169 Length=810068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 170982 GAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAAC 171041 ||||| |||| || || ||||| ||||| ||||||||||||||| |||| ||| Sbjct 97452 GAATGCCCTGATGACGTGTACATTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCA 97393 Query 171042 TATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTT 171101 || || ||| | || ||| |||| || | ||||| |||||| ||| | || ||| Sbjct 97392 TACTCATGTAGGGCAGGTTCTTGCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTT 97333 Query 171102 GATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACC 171161 ||||| |||||| ||| ||||||||||| || || ||| || | |||| || Sbjct 97332 GATCAGTCCGATGGTAGTTTTCTTGATGATGAACAAATGGAAGAGGGCTGGGTTCTTACT 97273 Query 171162 TGCGTCTCATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGA 171211 || || | ||||| || |||| ||| || ||| | ||||||| Sbjct 97272 TGTGTTGCTTATCCCACTTCTGATGTTGTCATTGAGACACACAAGGAAGA 97223 >seq823 Length=108574 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 183262 CCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGT 183320 || ||| | ||| | ||||| |||| || || | || ||| | ||||| ||||| || Sbjct 46617 CCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGT 46675 Query 183321 GGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCAT 183380 || || || || || || ||||| ||| ||||||| || | ||||||||||| || || Sbjct 46676 AGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTAT 46735 Query 183381 CTCTGGTGCAGTTGTTCCTTCTTC 183404 |||||||| || ||||| |||| Sbjct 46736 TTCTGGTGCCATTATTCCTACTTC 46759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622023558098880