Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq6024 682 0.0 seq456 138 1e-27 seq102 111 2e-19 seq823 102 9e-17 seq214 98.7 1e-15 seq54 89.7 6e-13 seq318 84.2 2e-11 >seq6024 Length=163856 Score = 682 bits (756), Expect = 0.0 Identities = 748/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || | || ||||| || || || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || ||||| ||||| | ||| | Sbjct 1452 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | |||||||||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| ||||| ||| |||| || ||||| | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | || |||||| | ||||| || ||||||| | || ||| Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | || ||| | |||| | | ||||||||||||||||||||||||| || || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||| ||||||||| || ||||| || |||||||| || || || | || Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || ||||||| | |||||||| || ||||||| |||||||| || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||||| ||| | || ||||||||||||||||||||||| ||||||| Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | |||||||| ||||| || |||||||| || |||||||| ||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| || ||| || | | || ||||| |||||||| || || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 | || |||| |||||||| ||| |||||||| || ||||| | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| || ||||| ||||| |||||| | || ||||||| ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| || |||||||| |||||||| ||| | | ||| |||| |||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 ||||||| || || | ||||||||| || || |||||||| ||||| || ||||||| Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||| ||||||||||| ||||| |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 572 bits (634), Expect = 2e-158 Identities = 727/995 (73%), Gaps = 10/995 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || ||||| || || | || ||||| || ||| | Sbjct 37275 AGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTC 37334 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | ||||||||| | || || || || || || || |||||||| || ||| | Sbjct 37335 GCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTG 37394 Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 || ||||||||| | || || ||||| ||| | || || |||||||||||||| || | Sbjct 37395 GCTAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCTACTCCTGCTAA 37453 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | |||||| | | | ||||||||||| || | |||||||| || | || Sbjct 37454 TAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACAAGGGGATTTTACTCG 37513 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 ||||| ||| | || || | ||||||||||| || |||||||| || || | ||| || Sbjct 37514 TTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAAT 37573 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACA 165534 |||||| ||| | || || |||||||| || ||| || || ||| || ||||| | Sbjct 37574 AGGTTTTATGTTACGTCAATTTGAACTTGCTCGA----TCCGTGCAATTGCGACCTTATA 37629 Query 165535 ATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTC 165594 |||| || || ||||||||||| |||||||| || ||| ||| || || || ||||| | Sbjct 37630 ATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCAC 37689 Query 165595 TGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCC 165654 | || || || ||||| || || || || || || ||||| || || |||||| Sbjct 37690 TAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCA 37749 Query 165655 TGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAG 165714 | ||||| |||||||||| ||||||||||||||||| || ||||| |||||||| || | Sbjct 37750 TCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGGGTTG 37809 Query 165715 CAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTT 165774 | || | ||||| | || |||| | || |||||||||| ||| ||||| ||||||| Sbjct 37810 CCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTT 37869 Query 165775 TGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGG 165834 | | |||||||||||| ||||| || ||| || ||| | ||||| | || | Sbjct 37870 TATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAG 37929 Query 165835 AAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCA 165894 |||||||||| ||||| || |||||||| || ||||| || || ||||| ||||||| Sbjct 37930 AAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTT 37989 Query 165895 GCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAA 165954 |||||| |||||| | || ||||||||| | ||||| || || | || | |||| | Sbjct 37990 CCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGA 38049 Query 165955 GTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGG 166014 || || |||| | | ||||| || || ||||| ||||| ||||| || || ||||||| Sbjct 38050 GTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGG 38109 Query 166015 AGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTA 166074 |||| | || || || ||||| || ||||| || ||||| || ||||| || ||| | | Sbjct 38110 AGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAA 38169 Query 166075 ATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCC 166134 | ||||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||| Sbjct 38170 ACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCC 38229 Query 166135 CTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||| || || | ||| | || ||||| |||||| Sbjct 38230 CTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 38264 >seq456 Length=400266 Score = 138 bits (152), Expect = 1e-27 Identities = 267/391 (68%), Gaps = 6/391 (2%) Strand=Plus/Minus Query 165633 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAAT 165692 || ||| | || || |||||| | |||| |||||| ||| |||||| || | |||| Sbjct 321061 GTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAAC 321002 Query 165693 CCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTC---TGCC--A 165747 || ||||| |||| ||| || || || || || | ||| |||| | ||| | Sbjct 321001 CCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTA 320942 Query 165748 TTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCA 165807 ||||| |||||| ||||| || ||||| | |||||||||||| | ||||||||| Sbjct 320941 TTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTTGC 320882 Query 165808 AAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCT 165867 | | ||| | ||||| || ||||||||||| | |||||||| |||| || | Sbjct 320881 ATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTT 320822 Query 165868 GGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCT 165927 ||||||| || ||||| |||||||| ||||| |||| | | ||||||||| | | Sbjct 320821 GGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTAT 320763 Query 165928 TTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATC 165987 | | || || || | | | || ||| || || | || | | | | | |||||| Sbjct 320762 CTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAATC 320703 Query 165988 TTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| ||||| |||| ||||| || || Sbjct 320702 TATGTGCCTATGACTTTGCTTCTCAAGAAAT 320672 >seq102 Length=2022542 Score = 111 bits (122), Expect = 2e-19 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 164100 GAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCT 164159 |||| || || || | |||||| |||| ||| ||| | ||||| | | |||| || | Sbjct 1591986 GAAATAATATTATTTATGGTGCCATTATTCCTACTTTTGCAGCTATAGATTTGCATTTTT 1592045 Query 164160 ACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAAC 164219 |||| || |||||||| || | | || ||||| | ||||| | |||| ||| | | Sbjct 1592046 ACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCTTATGAGC 1592105 Query 164220 TCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTT- 164278 | |||| | | ||| | |||| | | ||||||||||| | ||||| || || Sbjct 1592106 TAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGGAAAGTTA 1592165 Query 164279 -TCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGC 164337 | || || ||| ||||||| ||||||||| || | || || ||||| | | Sbjct 1592166 GTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCTATTATAGT 1592225 Query 164338 AGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCC 164397 || | | | || ||| || ||||||| | |||||||| || | ||||| ||||| Sbjct 1592226 TGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATGGTATGCC 1592285 Query 164398 TCTGGGCATCTCTGGAACCTTCAAC 164422 ||| || |||||| | || |||||| Sbjct 1592286 TCTAGGAATCTCTAGTACTTTCAAC 1592310 >seq823 Length=108574 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||| ||||| | ||| ||||| || || || ||||| || || ||||| || Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||| || || | ||||||||||| || || |||||||| |||| ||| ||||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 46763 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTG 164169 ||||| ||| |||| || ||||| || || Sbjct 46764 GCTATAGGTTTGCATTTTTACCCAATATG 46792 >seq214 Length=442246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 165579 TTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC-GTCGTTCGGGGTCGC 165637 || || || ||||||||||| || || ||||| || || || || || || || || Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT--TTTGGTGTAGC 75104 Query 165638 AGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTT 165697 ||| || || |||||| | ||||| |||||||||| |||||| |||||| || || Sbjct 75105 AGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACT----GCTGAACCCATT 75160 Query 165698 TCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGT 165757 ||| || ||||| || || | | ||||| | || || | || |||||||||| Sbjct 75161 TCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCTATTCATGGTGG 75220 Query 165758 TACAGTAGAGAATACTTT 165775 ||| ||||| |||||||| Sbjct 75221 TACTGTAGAAAATACTTT 75238 >seq54 Length=3626826 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 164714 CCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAAC 164773 || ||||| ||||| ||||| |||||| | || |||||||| ||||| |||||||| ||| Sbjct 2788072 CCCGTTGTAGGTATTTGGTTCACTGCTTTAGGTGTTAGCACTATGGCTTTCAACCTAAAC 2788131 Query 164774 GGTTTCAACTTCAACCA 164790 |||||||| |||||||| Sbjct 2788132 GGTTTCAATTTCAACCA 2788148 >seq318 Length=904506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 165287 TACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTC 165346 ||| || ||| | || ||||||||| | || ||| ||||| | || | |||||||| Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 165347 TACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGG 165406 |||||| || | | | | |||||| | | | ||||||||||| | | ||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 165407 GGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGC 165466 ||| || | || ||||| ||| | || | | ||||||||||| || |||||||| || Sbjct 515748 GGA-TTTACTCGTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 165467 CTTTGCACTTATAGGTTTCAT 165487 ||| ||| || | ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557612408623680