Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6024 666 0.0 seq662 111 2e-19 seq54 98.7 1e-15 seq823 96.9 4e-15 seq169 86.0 7e-12 >seq6024 Length=163856 Score = 666 bits (738), Expect = 0.0 Identities = 748/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | || ||||| || | || ||||| ||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||||||| | ||||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || |||||||| || |||| || || | ||||| ||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||||||||| || ||||| ||||| ||||| ||| | || || || || || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || || | ||||| ||| | |||||||| ||||||| | || || | Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | || ||| | | ||| | | |||||||||||||||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || |||||||| || ||||| ||| ||||| || ||||| || || || || |||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | | ||||| | |||||||| || ||||| | |||||| || || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | ||| || ||||||| ||| |||| ||||| || |||||||||||||| |||||||| Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || |||||||| ||||| |||||||| || || ||||| || |||||||| ||||| || Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 ||| |||| || || | | | | || | |||||||| || || ||| | || | | Sbjct 913 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| ||||||||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 | || ||||||||||||| || |||||||| || ||||| | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| || ||||| |||||||||||| | ||| ||||||| ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 |||| || |||||||| |||||||| ||| | | |||||||| || || | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 ||||||| || || | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||||||||| ||||| |||||| |||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCTATTGAA 520 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| || || | || | || |||||| |||| || ||||| || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || ||||| |||||||| || || | ||| ||| ||| | || || || || ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTA 37427 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || ||||| || || ||||||||| | | | | ||||| | | | ||||||||| Sbjct 37428 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGT 37487 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || || ||||| || ||| ||| | || || | ||| ||||||| Sbjct 37488 CCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTT 37547 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGT 179198 || ||||||||||| |||| || |||||||| ||| | || || |||||| | || || Sbjct 37548 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 37607 Query 179199 CTAGTCGGTATT-CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 || | ||| || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 37608 TCCGT-GCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 37666 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || || || ||||| || || ||||| ||||| |||||||| ||||| Sbjct 37667 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGG 37726 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || ||||| || || || ||| | ||||| | || || || || ||||||||||| || Sbjct 37727 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAA 37786 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || || | | || | || |||| || || ||||| Sbjct 37787 CCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCA 37846 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | |||||||| |||| ||||||||||| || Sbjct 37847 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 37906 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| |||||||| || ||||| || ||||| Sbjct 37907 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 37966 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 37967 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 38026 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | ||||| || || || || | Sbjct 38027 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACG 38086 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || |||||| | || || || |||||||| || ||||| || Sbjct 38087 TGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 38146 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 ||| || || || || || || || |||||| | |||||||||||||| | ||||| Sbjct 38147 CTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 38206 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 38207 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq662 Length=431101 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 176161 CTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGT 176220 |||| ||| || || || ||||||||||||||||| |||||||| || ||| || | Sbjct 315078 CTGATGATACATACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTT 315137 Query 176221 GCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAA 176280 || | ||||| || || || | |||||| || || | | || || |||||||||| Sbjct 315138 GCAGGGCTGGGGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGT 315197 Query 176281 GCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTT 176340 ||| |||||||| ||||| | || || | | |||| | ||||||||||||| Sbjct 315198 CTGATGGTTCGTTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTT 315257 Query 176341 CATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 |||| || || |||||||||||| | || | | |||| ||||| Sbjct 315258 CATACCCAACTTCAGATTGTGTGATTCACACCCACAGGGAAGCTGAACT 315306 >seq54 Length=3626826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 178384 CCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 178443 || ||||| ||||| |||||||||||| | ||||||||||| ||||| |||||||| ||| Sbjct 2788072 CCCGTTGTAGGTATTTGGTTCACTGCTTTAGGTGTTAGCACTATGGCTTTCAACCTAAAC 2788131 Query 178444 GGTTTCAACTTCAACCA 178460 |||||||| |||||||| Sbjct 2788132 GGTTTCAATTTCAACCA 2788148 >seq823 Length=108574 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 177686 TCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 ||||| || || |||||||| | ||||| ||||| || || || || || || |||||| Sbjct 46638 TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAA 46697 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || |||| || || | ||||| ||||| || ||||||||||| || ||||| || Sbjct 46698 CCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACT 46757 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTG 177839 ||| ||||| ||| | || || || || || || Sbjct 46758 TCTGCGGCTATAGGTTTGCATTTTTACCCAATATG 46792 >seq169 Length=810068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 176171 GTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGG 176230 ||| ||||||||||| ||||| |||||||||||||| | ||||| || | || || Sbjct 97435 GTACATTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGG 97376 Query 176231 TGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATC 176290 | | || || ||||||||| ||| | | || ||| ||||| |||| Sbjct 97375 TTCTTGCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAG 97316 Query 176291 GTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTAC 176350 || ||||||||||| || || || | || | |||| ||||||||| | ||||| || Sbjct 97315 TTTTCTTGATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCAC 97256 Query 176351 GAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTT 176390 ||| ||| |||||||| | || ||||| || ||| Sbjct 97255 TTCTGATGTTGTCATTGAGACACACAAGGAAGAAGATCTT 97216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596262298067840