Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq6024 621 4e-173 seq456 120 4e-22 seq214 107 2e-18 seq102 84.2 3e-11 >seq6024 Length=163856 Score = 621 bits (688), Expect = 4e-173 Identities = 730/987 (74%), Gaps = 0/987 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| |||||| |||||||| || | || ||||| || || || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | || | ||||| || || || ||||| ||||| | ||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCT 1393 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | ||||| ||||| Sbjct 1392 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1333 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || ||| | || || || || || Sbjct 1332 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 1273 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||||| ||||| || ||||||| | || |||| Sbjct 1272 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1213 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | || ||| | | || | | |||||||||||||||||||||| | | ||| Sbjct 1212 CTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1153 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 |||||||||||||||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 1152 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1093 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || |||| || |||| ||||| || ||||| | ||||||||| || ||| Sbjct 1092 GTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 1033 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| ||||||||||||||||| |||||||| Sbjct 1032 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 973 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | || || || || || || || || || || || || || ||||| ||| Sbjct 972 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 913 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || || || ||| | || | |||||||| || || || || || | ||| Sbjct 912 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 853 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||||||||| ||||| || || || ||||| |||||||| ||||| || || Sbjct 852 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 793 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 792 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCT 733 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || |||||||| || || || |||||||| ||| | ||| | ||| ||||| |||||| Sbjct 732 GCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 673 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || || |||||||| |||||||| ||| | | ||| |||| |||||||| | || ||| Sbjct 672 CTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 613 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 612 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 553 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCT 170338 || ||||||||||| ||||| |||||| Sbjct 552 CATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 545 bits (604), Expect = 3e-150 Identities = 730/1010 (72%), Gaps = 4/1010 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || ||||| || || | || | Sbjct 37258 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 37317 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| || ||| | || | || || ||| | || || || || ||||| || | Sbjct 37318 TTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCAT 37377 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCT 170783 |||| ||||| ||| | || ||||| || | ||||| ||| || ||| | || || || Sbjct 37378 GGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 37436 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || |||||| || | | | |||||| | | |||| |||||||| || | Sbjct 37437 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCA 37496 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 || |||||||| || |||| ||| | || || | |||| |||||| || |||||| Sbjct 37497 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCAC 37556 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGG 170963 || || || | || |||||||| ||| | || || |||||| | ||| ||| | Sbjct 37557 GGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGT-GCA 37615 Query 170964 ATTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 ||| |||| || ||||||||||| ||||||||||| || ||||| ||||| || || Sbjct 37616 ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 37675 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 ||| || ||||| || || ||||| ||||||| || || ||| ||||| || ||||| Sbjct 37676 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGC 37735 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || || ||| | ||||| | ||||| || || |||||||| ||||| |||||||| Sbjct 37736 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCA 37795 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| || | | || | ||| |||| | || |||||||||| ||| Sbjct 37796 TATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 37855 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 37856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 37915 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | ||||| || ||||| ||||| || ||||| || || ||||| || || || Sbjct 37916 AACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTT 37975 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 37976 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 38035 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGA 171442 ||| | ||| | ||| ||| || | | ||||| ||||| ||||| | || ||||| Sbjct 38036 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGA 38095 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 ||||| ||||||| || | ||||| |||||||| || || ||||| ||||| || || Sbjct 38096 CTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAA 38155 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 || || || || || |||||| ||||||| |||||||| | ||| || || ||||| Sbjct 38156 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 38215 Query 171563 AAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 |||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 38216 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 38265 >seq456 Length=400266 Score = 120 bits (132), Expect = 4e-22 Identities = 212/306 (69%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 171065 TTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTG 171124 ||||||| | || ||| | || || || ||| | |||| | |||| || | |||| Sbjct 321071 TTCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTA 321012 Query 171125 GACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTC 171184 || |||| ||||||||||||| ||| ||||| || || | | ||| |||| | Sbjct 321011 GATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTG 320952 Query 171185 ---TGCA--ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCA 171239 |||| |||||| |||||| ||||| || ||||| | ||||||||||||| | | Sbjct 320951 CTATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTA 320892 Query 171240 AACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCT 171299 ||||| || | | ||| | | ||||| ||||| || ||||| | |||||||| Sbjct 320891 AACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCC 320832 Query 171300 AATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTC 171359 || | || ||||| || || ||||| || || || ||||| |||| || ||||| Sbjct 320831 AACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTC 320773 Query 171360 TTTATG 171365 |||||| Sbjct 320772 TTTATG 320767 >seq214 Length=442246 Score = 107 bits (118), Expect = 2e-18 Identities = 154/211 (73%), Gaps = 11/211 (5%) Strand=Plus/Plus Query 171009 TTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCC 171068 |||||| | | ||||| || |||||||| || ||||| ||||||| || || || Sbjct 75037 TTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT- 75093 Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| || ||||| || || || ||| | ||||| | ||||| || | ||||| Sbjct 75094 TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG---- 75149 Query 171129 CTGAATCCATTTCATATGATGGGTGTTG-CAG-GTATCCTCGGCGGTGCATTGCTTTCTG 171186 ||||| ||||||||||| ||||| |||| ||| |||| | || | ||| || | | Sbjct 75150 CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCG 75207 Query 171187 CAATTCATGGTGTTACAGTAGAGAATACTTT 171217 | |||||||||| ||| ||||| |||||||| Sbjct 75208 CTATTCATGGTGGTACTGTAGAAAATACTTT 75238 >seq102 Length=2022542 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 169577 CACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCT 169636 || || || || || |||||||| || | | |||||||| || ||||| | |||| || Sbjct 1592039 CATTTTTACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCT 1592098 Query 169637 TTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGG 169696 | | || |||| | | ||| | | || | | ||||||||||| | ||||| Sbjct 1592099 TATGAGCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGG 1592158 Query 169697 GAATT--GTCCTATCGTCTGGGTATGCGCCCTTGGATCTGT-GTTGCTTACTCTGCTCCC 169753 || | || | | |||| |||||||||||||||| ||| ||| | || || |||| Sbjct 1592159 AAAGTTAGTTTTTCCATCTGCGTATGCGCCCTTGGAT-TGTAGTTACGTATTCAACTCCT 1592217 Query 169754 GTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGAC 169813 || | || | |||||||| || |||| || |||| ||||| || | ||| Sbjct 1592218 ATTATAGTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGAT 1592277 Query 169814 GCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCT 169867 | ||||||||| || ||||| | || || ||| ||| | | || |||||| Sbjct 1592278 GGTATGCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGCT 1592331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592153807460480