Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq50617 136 5e-27 seq1761 96.9 4e-15 seq1889 91.5 2e-13 >seq50617 Length=115889 Score = 136 bits (150), Expect = 5e-27 Identities = 381/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||||| || || |||||||| | || | |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| | || |||||||| | ||| ||||||| |||| | | | || || ||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 92312 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--AC-CGGCGCTGTCATG 24310 || ||||| || ||| ||||| || || | || || | || | | || ||| Sbjct 92311 GATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||||||||| ||||| || | ||||| || |||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || ||||| ||||| ||||| || || || |||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | || | | || | || || || || || || ||||| Sbjct 92074 CTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGC 92015 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 24610 ||| || || | || || ||||| | ||| ||||| || || || | ||| | Sbjct 92014 AAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTG 91955 Query 24611 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 24670 || || | ||| | || || || || | ||||| || || ||||| || || || Sbjct 91954 GCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTT 91895 Query 24671 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||||| | ||| || || | || || || ||||| || Sbjct 91894 GTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || |||||||| | ||| ||||| || || || ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || | |||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||| ||||||||||| || | ||| | | |||| | ||||||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 54654 ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987 |||| ||| | || ||||| ||||| || ||||||||| || |||| || ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047 |||| || || | ||| ||||| | ||| ||| | ||||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTC 54077 |||| ||||||||||| ||||||||||| Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTC 333053 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 53168 AATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAA 53227 || ||||| ||||||||||| || |||||| ||||| | | ||||||| ||||| | | Sbjct 331196 AAAACTCTGCGAGTGTAAATGTTGGAGGTATAAGGTTCAAAACACTCATTGTTTCCAAGA 331255 Query 53228 ATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 53262 || ||| ||||| ||||| ||||||||||| || Sbjct 331256 ATCTGACTGGTTGAAGCAGTGGGCATAGGTGCTAC 331290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592936380919440