Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1025 100 2e-16 seq1014 98.7 8e-16 seq55116 93.3 4e-14 >seq1025 Length=2429094 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||| ||||| ||||||||||| ||||| || || ||| Sbjct 1182466 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAA 1182525 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | || |||||||||||||||||||| ||||| ||||| ||||| | Sbjct 1182526 GACGGGAGGACTCTTGCAGATTACAATATTCAGAAGGAGTCTACCCTTCATCTGGTGCTG 1182585 Query 29175 CGATTACGAGGAGGG 29189 || | || || ||| Sbjct 1182586 CGCCTGCGTGGTGGG 1182600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || || |||||||| | || |||||| || || |||||||||||| Sbjct 1182680 AAGCAAAGA-TTCAGGACAAAGAAGGAATACCTCCAGATCAGCAGAGGCTTATCTTTGCG 1182738 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || ||||| || |||||| | ||| |||| ||||||||||| |||||||| || ||| Sbjct 1182739 GGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAATATACAGAAGGAGTCCACT 1182798 Query 29160 CTTCAC 29165 || ||| Sbjct 1182799 CTGCAC 1182804 >seq1014 Length=2264649 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| || |||||||| || ||| ||| | Sbjct 109506 AATGCAGATTTTTGTGAAGACTTTGACTGGTAAAACCATAACTCTCGAGGTTGAAAGTTC 109565 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||| || || ||||| || | || ||| || Sbjct 109566 GGATACAATCGACAATGTCAAGGCAAAGATACAGGACAAAGAGGGCATCCCTCCAGACCA 109625 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||||||||| ||||| || || |||||| | ||| | || |||||||| Sbjct 109626 GCAAAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGGAGGACTCTTGCAGATTACAA 109685 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||||||||| || || ||||| | || || || || ||| Sbjct 109686 TATTCAGAAGGAATCTACCCTACATCTGGTGCTGCGCTTGCGTGGTGGG 109734 >seq55116 Length=591887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || |||||||| | ||| |||||| || || || || |||||||| || Sbjct 230342 AAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTGATTTTTGCGGGAAA 230283 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 || || || ||| | |||| |||| ||||| |||||||||||||| ||||| || || Sbjct 230282 GCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAATATTCAGAAGGAGTCTACACTCCA 230223 Query 29165 CATGGT 29170 | |||| Sbjct 230222 CCTGGT 230217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427783671837965