Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1025 154 2e-32 seq1014 132 7e-26 seq55116 125 1e-23 seq55622 87.8 3e-12 seq54996 84.2 3e-11 >seq1025 Length=2429094 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || ||||| || ||| | ||| |||| ||| Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| |||| | || || |||||||| ||||||||||| ||||| || | Sbjct 1182204 C-GATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 1182262 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||| | |||||||| || || || ||||||||| | || || |||| ||||| | Sbjct 1182263 AGCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACA 1182322 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| ||||| |||||||| ||||| | ||||| ||||| || || Sbjct 1182323 ATATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGGGAT 1182374 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || ||||||||||| | || ||||| Sbjct 1181917 ATGCAAATCTTTGTGAAGACCTTGACGGGAAAAACTATAACCTTGGAAGTTGAAAGCTCG 1181976 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || || || ||||| || || ||||| ||||| ||||| Sbjct 1181977 GATACCATAGATAATGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCACCGGATCAG 1182036 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || || |||||||| ||| | | ||||||| ||||| || Sbjct 1182037 CAGAGGTTGATCTTTGCTGGGAAGCAATTAGAAGATGGAAGGACATTAGCCGATTACAAC 1182096 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || ||||||||||| | ||| | || || || || Sbjct 1182097 ATTCAGAAGGAGTCCACCTTGCATTTGGTGCTTCGTCTGCGTGGAGGAAT 1182146 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| || || | ||| | || Sbjct 1182373 ATGCAGATTTTTGTGAAGACTCTGACCGGAAAAACCATTACATTGGAGGTCGAGAGTTCG 1182432 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || ||| ||||| || ||||||||||| ||||| ||||| Sbjct 1182433 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCAGATCAG 1182492 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| |||||||| || || | || || | | || | | |||||| ||| Sbjct 1182493 CAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAAGACGGGAGGACTCTTGCAGATTACAAT 1182552 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | ||| |||| | || | || ||||| || Sbjct 1182553 ATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTGCGTGGTGGGAT 1182602 >seq1014 Length=2264649 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| | || || ||||| || ||| | ||| |||| Sbjct 109278 AATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTC 109337 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 109338 CGATACTATTGATAATGTGAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCTGACCA 109397 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| || || || ||||| ||| | | || |||| |||||| || Sbjct 109398 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAAGATGGAAGGACCTTAGCAGATTACAA 109457 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || |||| ||||| | ||||| || || || || Sbjct 109458 TATCCAAAAGGAATCGACACTGCACTTGGTGCTGCGTTTGCGTGGCGGAAT 109508 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || ||||| |||||| | ||| ||||| Sbjct 109506 AATGCAGATTTTTGTGAAGACTTTGACTGGTAAAACCATAACTCTCGAGGTTGAAAGTTC 109565 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| | || || || || || ||||| || || || || || || Sbjct 109566 GGATACAATCGACAATGTCAAGGCAAAGATACAGGACAAAGAGGGCATCCCTCCAGACCA 109625 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| |||||||| || || |||| ||| | | || | | |||||| || Sbjct 109626 GCAAAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGGAGGACTCTTGCAGATTACAA 109685 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| || | ||| |||| | || || || ||||| || Sbjct 109686 TATTCAGAAGGAATCTACCCTACATCTGGTGCTGCGCTTGCGTGGTGGGAT 109736 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| ||||| || || || || || | ||| | ||| Sbjct 108595 ATGCAGATATTTGTTAAGACTCTAACCGGAAAGACAATCACCCTTGAGGTGGAAAGCTCG 108654 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| ||||| || || || || || || ||||| || || Sbjct 108655 GACACTATTGACAATGTAAAAGCCAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAG 108714 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| |||| || || | || ||||| Sbjct 108715 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACTTTGGCTGACTATAAC 108774 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || ||||| | || | || |||||||| Sbjct 108775 ATCCAAAAAGAATCCACCCTTCACTTGGTGCTTCGCCTTCGTGGTGGTAT 108824 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || ||||| ||||||||||| | || ||||| Sbjct 109050 AATGCAAATTTTTGTGAAGACGCTGACAGGAAAAACTATAACCTTGGAAGTTGAAAGCTC 109109 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || ||||| || || || || || ||||| || || Sbjct 109110 GGATACTATAGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGACCA 109169 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| || || ||| |||| ||| | | || | | || ||||| Sbjct 109170 GCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTTGCTGACTATAA 109229 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || ||||| ||||| | || | || ||||| || Sbjct 109230 CATTCAGAAGGAGTCCACCTTGCACTTGGTGCTTCGGCTGCGTGGTGGAAT 109280 >seq55116 Length=591887 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | ||||| || || ||||| || || || | ||| | ||| Sbjct 229514 AATGCAAATATTCGTGAAGACGCTGACGGGCAAGACAATCACACTTGAGGTGGAAAGTTC 229455 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || |||||||| || || || || ||||||||||| Sbjct 229454 TGATACCATTGACAATGTGAAAGCTAAGATTCAAGACAAGGAGGGGATCCCACCTGATCA 229395 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||||||||| || | |||||| |||| ||| | | |||||| || Sbjct 229394 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAA 229335 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || ||| || ||||| | ||| | || | || |||||| Sbjct 229334 TATCCAGAAGGAAAGCACCCTGCATCTTGTTCTTCGCCTTCGTGGTGGT 229286 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| || || || || | || ||||| Sbjct 230197 ATGCAGATTTTTGTTAAAACTCTTACAGGAAAGACAATCACCTTGGAAGTTGAAAGTTCA 230138 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| |||| | ||| || || ||||| || |||||||| || || ||||| Sbjct 230137 GACACAATCGATAATGTGAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCAGATCAG 230078 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||||||||| || | |||||| | |||||||| | || || ||| Sbjct 230077 CAGAGATTGATATTTGCAGGAAAGCAGCTTGAGGATGGACGAACATTGGCTGACTACAAT 230018 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| |||||||| ||||| | || | || ||||| || Sbjct 230017 ATCCAGAAAGAATCCACTTTGCACTTGGTCCTCCGCCTCCGTGGTGGAAT 229968 Score = 109 bits (120), Expect = 8e-19 Identities = 171/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || || || || || || | ||| | || ||| Sbjct 229741 ATGCAGATTTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC- 229683 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| |||| | ||| ||||| || ||||| || || || ||||| || || Sbjct 229682 TGATACGATTGATAATGTCAAAGCCAAAATACAGGATAAGGAGGGGATCCCACCAGACCA 229623 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||||||||| || || ||| | || ||| | || || | | |||||| || Sbjct 229622 GCAGAGGCTTATTTTTGCTGGGAAGCAACTTGAAGATGGCCGCACCCTGGCAGATTACAA 229563 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||| ||||| ||| | ||| | || | || |||||||||| || ||| ||| Sbjct 229562 CATTCAGAAAGAGAGCACTCTACATCTTGTCCTTCGCCTACGAGGTGGAATGCAAATATT 229503 Query 124777 C 124777 | Sbjct 229502 C 229502 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| ||| | || |||| Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || |||||||| || || || ||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | |||||| | ||||| || | ||||||||| Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || ||||| | || | | |||||||| Sbjct 230245 ATTCAGAAGGAGTCTACACTCCACCTGGTTCTCCGCCTTAGGGGTGGTAT 230196 >seq55622 Length=839323 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| || |||||| | ||||||||| |||| |||| |||||||| ||||| | ||| Sbjct 331531 ATGAGCGATCATACATGTCAATAAAGCATAAGACGCAATGTTAAATGGAACACCAAGACC 331590 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAG 205544 ||||||||| || | |||||||||||||||| ||| Sbjct 331591 CATATCAGCAGACCGCTGATACATTTGACATGAAAG 331626 >seq54996 Length=250521 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || |||||||| || || || || ||||| ||||||||||| || || ||| Sbjct 56559 TTCAGGACAAGGAAGGTATCCCTCCAGACCAGCAAAGACTTATTTTTGCTGGTAAGCAAC 56618 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 | || ||| ||||||| | | |||||||| || ||||| || ||||| Sbjct 56619 TGGAAGATGGTCGAACTCTTGCTGATTATAACATCCAAAAGGAGTCAAC 56667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754456881110400