Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq55116 95.1 2e-14 seq1025 84.2 3e-11 >seq55116 Length=591887 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | |||||| ||||| || || ||||| | Sbjct 229743 CCACCGCGAAGCCTGAGGACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 229802 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || |||| ||| || | ||| ||||||||||| ||||| || ||||| || |||||| Sbjct 229803 AATGTCCTGCCATCCTCAAGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGA 229862 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 229863 ATGCCTTCCTTATCCTG 229879 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||| | | |||| || | ||||| || || ||||||||||| | Sbjct 230199 CCACCCCTAAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCAGCC 230258 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| || ||| || | || ||||| |||||||||| || |||||||| || ||| Sbjct 230259 AAAGTTCGGCCATCCTCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGA 230318 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 230319 ATTCCTTCTTTGTCCTG 230335 >seq1025 Length=2429094 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || ||||| ||||| ||| || ||||| ||||| | | || | | ||| || Sbjct 1182353 ACCAAGTGCAAAGTCGATTCCTTTTGA-ATATTGTAATCGGCTAAGGTCCGTCCATCCTC 1182295 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| || || |||||||||||||| || ||||| || || || || |||||||| ||||| Sbjct 1182294 TAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCTTCTTTGTCTTG 1182235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742543058453760