Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1889 118 2e-21 seq1761 91.5 3e-13 seq51957 84.2 5e-11 >seq1889 Length=778003 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 248781 ccTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAAC 248840 ||||||| | | ||| |||| | || |||||| || ||||||| |||| |||||||| Sbjct 334068 CCTGGACAGTGAGATAAACTATGACAGAGATTTTGACTACGATTATTTTGGCTTCAAAAC 334009 Query 248841 GCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACAT 248900 || |||| || ||||| | || ||||||| ||| | |||||| | ||||||||| Sbjct 334008 TCTTGAGAGGTCATATCTTTTAAAGGTTGATGGGAAGGTTGTGGAAAGGCCTCAGCACAT 333949 Query 248901 GTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA 248960 ||| ||| |||| ||||| || || ||||| |||||||| || || || |||| || Sbjct 333948 GTTAATGAGAGTTGCTGTTGGTATCCACAAAGATGACATGGACTCTGTTCTTAAGACATA 333889 Query 248961 CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| | | || ||| | || ||||| || || || || || || || || || Sbjct 333888 CCATTTGATGTCTCAGCGTTGGTTCACTCATGCTACCCCTACCCTTTTTAATGCAGGAAC 333829 >seq1761 Length=289715 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| ||||| ||||||||| || |||| ||| || || | || | Sbjct 164923 AGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGATCCTACCTATTGAAGGT 164864 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| | || ||| || ||| |||||||||||| | || ||||| || ||||| Sbjct 164863 CCAAGGAAAGGTTGTAGAAAGACCTCAACACATGTTGATGAGGGTTGCTGTTGGAATTCA 164804 Query 248928 CAAGGATGACATAGA 248942 |||| ||||||| || Sbjct 164803 CAAGAATGACATTGA 164789 >seq51957 Length=105213 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 |||||| || || |||| ||||| ||||||||| || |||| || || || | || | Sbjct 19447 AGATTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTATTGAAGGT 19506 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | || ||| | || ||| | ||| |||||||||||| | || || || || ||||| Sbjct 19507 CCAAGGAAAGGTTGTAGAAAGGCCTCAACACATGTTGATGAGGGTCGCGGTTGGAATTCA 19566 Query 248928 CAAGGATGACATAGAG 248943 ||||||||| || ||| Sbjct 19567 CAAGGATGATATTGAG 19582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072310801261504