Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq49365 114 1e-20 seq45900 114 1e-20 seq1868 105 5e-18 seq1014 98.7 8e-16 seq54652 95.1 1e-14 seq1025 93.3 3e-14 seq50979 86.0 5e-12 >seq49365 Length=33059 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||| |||||||| || |||| | || |||||||| || ||||| || Sbjct 27864 CTCCTTTTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCCAGTTGCTTGCCGGCAAA 27805 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | |||||||||||| || || ||| || Sbjct 27804 AATCAGCCTCTGCTGGTCAGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 27745 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||||||||| | ||| || ||||||||||| || |||||||| Sbjct 27744 GTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 27685 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 27684 GAAGATCTGCATG 27672 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || || | ||| || || |||||||||||| ||||||||| || || || Sbjct 27431 CTCAAGACGAGGTGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCAAGGGTACGGCCG 27372 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || ||||| || |||| || ||| ||||| || || | |||||||||| Sbjct 27371 TCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTG 27312 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| | ||| ||||||| ||| ||| Sbjct 27311 TCCTGGATCTTGGCCTTGACATTATCGATGGTGTCAGAGCTCTCAACCTCCAAGGTGATC 27252 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| || || || || || || |||||| Sbjct 27251 GTCTTTCCCGTGAGGGTTTTGACGAAAATCTGCATG 27216 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||| || || || || ||| || || |||| ||| Sbjct 27653 ACCAGGTGGAGGGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTCC 27594 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | || ||| ||||| || || | |||||||||||| Sbjct 27593 AGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 27534 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||||||||||| ||| |||||||| Sbjct 27533 ATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCCACCTCCAGGGTGATCGTCTTC 27474 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||||||||| Sbjct 27473 CCTGTCAAGGTCTTGACGAAGATTTGCAT 27445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||||||| || | |||| || || || ||||||||||| Sbjct 27179 TCCTTCTGGATATTGTAGTCGGCGAGGGTCCTGCCGTCTTCGAGCTGCTTTCCGGCGAAG 27120 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | || ||||| ||| || || |||||| Sbjct 27119 ATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTG 27060 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||| | ||| || |||||||| || ||||| ||||| Sbjct 27059 TCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACG 27000 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 26999 AAGATTTGCAT 26989 >seq45900 Length=1264 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || |||||| |||||||||||| ||||||||| || |||| |||| |||| || Sbjct 499 TGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGACCGTCCTCCAACTGC 440 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||| ||||| || || ||||| | ||| ||||||||| || || Sbjct 439 TTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTG 380 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 |||||| | | | |||| | ||| ||||| | || || |||||||| || Sbjct 379 GCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTG 320 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || || || || ||||| |||||||| Sbjct 319 AGGGTTTTGACGAAGATCTGCATGTT 294 >seq1868 Length=298818 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||||||||| |||||| || |||| | || |||| ||| Sbjct 224129 TGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGACCATCCTCCAATTGC 224070 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| || |||||||| | ||| ||||||||| || || Sbjct 224069 TTGCCGGCGAAGATCAGACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTTG 224010 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| || ||| ||||| | ||| || ||||| || || Sbjct 224009 GCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGTG 223950 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| Sbjct 223949 AGGGTTTTGACGAAGATCTGCAT 223927 >seq1014 Length=2264649 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||||||||||||| ||||| || | | || || Sbjct 109259 ACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGAGTCCTTCCATCTTCT 109200 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||||| ||| ||||| || || | |||||||||||| | Sbjct 109199 AGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGA 109140 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | ||| | || || |||| ||| || || || Sbjct 109139 ATCTTTGCCTTCACATTGTCTATAGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTTT 109080 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||||||||| |||||||| Sbjct 109079 CCTGTCAGCGTCTTCACAAAAATTTGCAT 109051 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || || || |||||| ||| ||| |||| || Sbjct 109031 ACCAAGTGGAGGGTTGATTCCTTTTGGATATTATAGTCGGCAAGTGTCCGACCGTCTTCA 108972 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||||| ||||||||| || || | |||||||||||| Sbjct 108971 AGTTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTGG 108912 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | || || |||| || || || || Sbjct 108911 ATCTTAGCCTTGACATTATCAATGGTGTCCGAGCTTTCGACTTCCAAAGTTATGGTTTTT 108852 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || || |||||||||||||| Sbjct 108851 CCCGTCAAGGTTTTAACAAAGATTTGCAT 108823 >seq54652 Length=76240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTT--GGCGATCGTCGTCCAG 45189 ||| || ||| ||||||||| || ||||| || | | || | ||| ||| ||| || Sbjct 48123 GTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCTAAGGTTCGGCCATCCTCG---AG 48067 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 ||||| || ||||| || | |||||| ||||| || || | |||||||||||| || Sbjct 48066 CTGTTTCCCAGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGAT 48007 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || |||||| | | | ||||| ||| ||||| | ||| || ||||| || Sbjct 48006 CTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTCCC 47947 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCAT-GTTGCC 45342 ||| || || ||||| ||||| ||||| |||||| Sbjct 47946 CGTTAGGGTTTTCACGAAGATCTGCATGGTTGCC 47913 >seq1025 Length=2429094 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||| |||||||||||||||||| ||| | | | | || || Sbjct 1182125 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCATCTTCT 1182066 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || || || || ||||||| ||| || || || || | |||||||||||| Sbjct 1182065 AATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGG 1182006 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | ||| | || || |||| ||| || || || Sbjct 1182005 ATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATAGTTTTT 1181946 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||||||||||||||||| Sbjct 1181945 CCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 >seq50979 Length=594689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167 ||||||| || | || | || | ||| ||||| ||||||||| || ||||||||| Sbjct 43767 CGCCACCCCTGAGCCTGAGGACAAGGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGG 43826 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 || || |||| || || || || |||||||| || | ||||| ||||| || | Sbjct 43827 CTAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 43886 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| || || |||||| | | | |||| ||| | Sbjct 43887 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCGATGGTGTCGGAGGACTCGA 43946 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| | || || ||||| || || || || || |||||||| |||||| Sbjct 43947 CCTCGAGAGTGATAGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCATG 43996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394565760776863