Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1014 82.4 6e-11 >seq1014 Length=2264649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||||||||| ||||| ||||| ||| Sbjct 108821 CCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCAGCC 108762 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || || || ||| |||| || || || || ||| || Sbjct 108761 AAAGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGA 108702 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||| ||||| || |||| | || || || | ||| ||||| ||| || || Sbjct 108701 ATGCCCTCCTTGTCCTGGATTT-TGGCTTTTACATTGTCAATAGTGT--CCGAGCTTTCC 108645 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | || ||||| | || || ||||| || ||||| Sbjct 108644 ACCTCAAGGGTGATTGTCTTTCCGGTTAGAGTCTTAACAAATATCTGCAT 108595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378854845751235