Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq50617 154 2e-32 seq1761 100 4e-16 seq1889 87.8 2e-12 >seq50617 Length=115889 Score = 154 bits (170), Expect = 2e-32 Identities = 385/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||| ||||| |||||||| | || | ||||| || || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || |||||||| | ||| ||||||| ||| |||||| |||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAG 92311 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 33757 || ||||| || ||| || ||||| || || | ||| || | || | | || ||| Sbjct 92310 ATCCCTTCGAC-GCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| | ||||||||| ||||| || | || || ||||||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || ||||| ||||| ||||| ||||| || |||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | || | | || | || || || || ||||| ||||| Sbjct 92074 CTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGC 92015 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 34057 ||| || || | || || ||||| | ||| ||||| || || || | ||| | Sbjct 92014 AAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTG 91955 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 || || | ||| | || || || || | ||||| || || ||||| || || || Sbjct 91954 GCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTT 91895 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 ||||| | ||| || || | || ||||| || || || Sbjct 91894 GTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 100 bits (110), Expect = 4e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || |||||||| | ||| ||||| || || || ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | ||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 |||||| ||||||||||| |||| ||| ||| | ||||| | ||||||| | || Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTG--GACCTTCAATAGGTAGGATCTCTCA 164887 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164888 AGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 63636 AAACAGCTAGA-CAT--TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 |||| || ||| ||| |||| | | | |||||| |||||||| | |||||| | ||| Sbjct 333799 AAACTGCAAGAACATACTTGGGGCTGTGGAGTTCCTGCATTAAAAAGGGTAGGGGTAGCA 333858 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 || || ||||| | ||| | | || ||| |||| || | | ||||| || || | Sbjct 333859 TGAGTGAACCAACGCTGAGACATCAAATGGTATGTCTTAAGAACAGAGTCCATGTCATCT 333918 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 | || || || || || || | |||||||||||||||||| ||||| |||| || Sbjct 333919 TTGTGGATACCAACAGCAACTCTCATTAACATGTGCTGAGGCCTTTCCACAACCTTCCCA 333978 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | | || || | || || | || | |||||| || |||||||| | ||| ||| Sbjct 333979 TCAACCTTTAAAAGATATGACCTCTCAAGAGTTTTGAAGCCAAAATAATCGTAGTCAAAA 334038 Query 63873 TCTC 63876 |||| Sbjct 334039 TCTC 334042 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63166 TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGAC 63225 |||| ||| | || ||||| || || || ||||||||| || |||| | ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 63226 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 |||| || || | ||| ||||| | ||| ||| | ||||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 63286 CAGGAATCCAAAGAGCTATAAATAGATCTC 63315 |||| ||||||||||| ||||||||||| Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTC 333053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628984642605840