Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq50617 132 6e-26 seq1761 96.9 5e-15 seq1889 86.0 8e-12 >seq50617 Length=115889 Score = 132 bits (146), Expect = 6e-26 Identities = 254/369 (69%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||||| || || |||||||| | || | |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| | || |||||||| | ||| ||||||| |||| | | | || || ||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 92312 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCACTGTCATG 36333 || ||||| || ||| ||||| || || | ||| || | || | | | ||| Sbjct 92311 GATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| | ||||||||| ||||| || | ||||| || |||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 || || ||||| ||||| ||||| || || || |||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 36514 CTGTACTTC 36522 ||| || || Sbjct 92074 CTGGACCTC 92066 >seq1761 Length=289715 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || |||||||| | ||| ||||| || || || ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | ||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| ||||||||||| || | ||| | | ||||| | ||||||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 66685 ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||| | ||| || || ||||| | ||| | | || Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| |||| || | | ||||| || || || || || || || || || | |||||| Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| ||||| || | ||| | | || || | || || | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 |||||| || |||||||| | ||| ||| |||| Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTAGTCAAAATCTC 334042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657302341790520