Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1014 111 2e-19 seq1025 98.7 1e-15 seq55116 89.7 5e-13 seq49365 87.8 2e-12 seq1868 87.8 2e-12 seq45900 82.4 8e-11 >seq1014 Length=2264649 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || |||||||| |||||||| || || |||| |||||| Sbjct 108803 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCG 108744 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| |||| || | ||||| || || || ||||| || ||||| | Sbjct 108743 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 108684 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||||| | || | ||||| | | |||||||||| ||| | ||||| Sbjct 108683 ATTTTGGCTTTTACATTGTCAATAGTGTCCGAGCTTTCCACCTCAAGGGTGATTGTCTTT 108624 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || ||||| ||||| Sbjct 108623 CCGGTTAGAGTCTTAACAAATATCTGCAT 108595 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| || || || || ||||| || || || ||||| Sbjct 1182810 AACAAGGTGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTC 1182751 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||| ||| |||| || | |||||||| |||||||| ||||||||||| | Sbjct 1182750 AAGCTGTTTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTC-CT 1182692 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||| ||| | | || | ||| || | ||| ||||| | ||| | |||| Sbjct 1182691 GAATCTTTGCTTTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCT 1182632 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| ||||| || || || ||||| Sbjct 1182631 TCCCAGTCAATGTTTTCACAAAGATCTGCAT 1182601 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||| || ||||| || ||||| | || ||| |||||| ||||| Sbjct 1182575 TGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCAAGAGTCCTCCCGTCTTCAAGCTGC 1182516 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| || | ||||||||| || || || ||||||||||| ||| | || Sbjct 1182515 TTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGAATACCTTCTTTGTC-CTGAATCTT 1182457 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | |||||| | ||| ||||| | || | || || ||||| Sbjct 1182456 CGCCTTGACATTGTCAATTGTGTCCGAACTCTCGACCTCCAATGTAATGGTTTTTCCGGT 1182397 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 1182396 CAGAGTCTTCACAAAAATCTGCAT 1182373 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | |||||||| || ||||| |||||||| || || | || || Sbjct 230216 AACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCAGCCAAAGTTCGGCCATCCTC 230275 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||| || || ||| | ||||| | |||||||| || || || ||||||||||| | Sbjct 230276 GAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGGGGAATTCCTTCTTTGTC-CT 230334 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| || | | || | ||||||| ||| || |||| || | |||| Sbjct 230335 GAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACTTCAAGAGTAATAGTCT 230394 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| | |||||| || || || ||||| Sbjct 230395 TTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 >seq49365 Length=33059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || || || ||||||| | ||||| || || || |||||||| || Sbjct 27144 GTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTT 27085 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | ||||||| | ||||||||| | ||| | Sbjct 27084 ATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGAT 27025 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 27024 GGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 26989 >seq1868 Length=298818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| || || || || || ||| | |||| ||| || | ||| Sbjct 223901 TGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGACCGTCCTCCAACTGC 223842 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || ||||| |||||| ||| |||||||||||||| || ||||| ||||| ||| || Sbjct 223841 TTCCCAGCGAAGATCAAACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTTG 223782 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| ||| ||||| | ||| | ||||| ||||| Sbjct 223781 GCCTTGACGTTGTCTATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGTG 223722 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 223721 AGGGTTTTGACGAAGATCTGCAT 223699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| ||| | |||| || || | || || || Sbjct 224123 GTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGACCATCCTCCAATTGCTTGCCG 224064 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||||||||| || ||||| ||||| ||| || || Sbjct 224063 GCGAAGATCAGACGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTG 224004 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| ||| ||||| | ||| | ||||| ||||| | ||| Sbjct 224003 ACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTT 223944 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 223943 TTGACGAAGATCTGCAT 223927 >seq45900 Length=1264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || ||||| || || ||| | |||| ||| || | ||| || || Sbjct 494 CGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGACCGTCCTCCAACTGCTTCCC 435 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||||| ||| |||||||| ||||| || ||||| ||||| ||| || || Sbjct 434 GGCGAAGATCAAACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTT 375 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||| ||||| | || | ||||||||||| | || Sbjct 374 AACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGT 315 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 314 TTTGACGAAGATCTGCAT 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495407936757600