Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq50617 154 2e-32 seq1761 96.9 5e-15 seq1889 91.5 2e-13 >seq50617 Length=115889 Score = 154 bits (170), Expect = 2e-32 Identities = 385/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||| ||||| |||||||| | || || |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| | || |||||||| | ||| ||||||| |||| | | || || ||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 92312 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTG-GCGCTGTCATG 50135 ||| ||||| || || ||||| | || | ||| || | ||| | || ||| Sbjct 92311 GATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| | ||||||||| ||||| || | || || ||||||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || ||||| ||||| ||||| ||||| || |||||||| | ||||||| || Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | || | |||| | || || || || || || ||||| Sbjct 92074 CTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGC 92015 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 ||| || || | || || ||||| ||||| |||| ||| || || | ||| | Sbjct 92014 AAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTG 91955 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 || || | ||| | || || || || | ||||| || || ||||| || || || Sbjct 91954 GCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTT 91895 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| | ||| || || | || ||||| || || || Sbjct 91894 GTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || |||||||| | ||| ||||| || || || ||||| | ||||| | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | ||||| || || || || | |||||||| || || || | ||| || Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| ||||||||||| || | ||| | | ||||| | ||| ||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 80564 ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||| | ||| || || ||||| | ||||| | || Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||| || | | || || || || || || || || || || || | |||||| Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| || | || || | || || | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 |||||| || |||||||| | ||| ||| |||| Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTAGTCAAAATCTC 334042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 80092 TTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||||||| ||||| | || | ||| |||| |||| | || | | ||| |||| | Sbjct 333436 TTTCCTCCCCCTTGATCAACATAACGAGCAGTGTCATTAAACACACGAAGCATAGGAACA 333495 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || || ||||| ||||| | || ||||| || | ||||| |||||| | Sbjct 333496 ATGCCATTAGAAGTCCCATTTGTCCCACAAATGTAGCTGCCTGTTGCACGGATATTATGA 333555 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 | || | ||| ||||| || || ||| || | || ||| || || |||||| Sbjct 333556 ACAGAGAAACCAATTCCTCCAGCTGATTTGCTAATAACAGCACATTCCTTCAAGGTATCA 333615 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 | || |||| ||||||||||| |||| | ||||| |||||| Sbjct 333616 AATATTCCCTGAATGCTATCATCTTTCATACACACAAGAAAGCAGCTA 333663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717318862576920