Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1025 102 6e-17 >seq1025 Length=2429094 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||||||| | ||| |||||| || | |||||||||| Sbjct 1182143 CCTCCACGCAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCT 1182084 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | | || || ||||| || || ||||| ||||| | ||| ||||| | || Sbjct 1182083 AATGTCCTTCCATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGG 1182024 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| | | | || || | ||| || || Sbjct 1182023 ATACCCTCCTTGTCTTGGATCTTTGCCTTGACATTATCTATGGTATC-CGAGCTTTCAAC 1181965 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||||||||| || | || |||||||| |||||||| Sbjct 1181964 TTCCAAGGTTATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| ||| | || |||||| || | ||||||||| | Sbjct 1182599 CCACCACGCAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCTGCA 1182540 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | || ||||| ||||| || | | || ||||| | || Sbjct 1182539 AGAGTCCTCCCGTCTTCAAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGATCTGGTGGA 1182480 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || |||| || | | ||||| || ||| |||||| | |||||| Sbjct 1182479 ATACCTTCTTTGTC-CTGAATCTTCGCCTTGACATTGTCAATTGTGTCCGAACTCTCGAC 1182421 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| ||||| ||||||||||| ||||| Sbjct 1182420 CTCCAATGTAATGGTTTTTCCGGTCAGAGTCTTCACAAAAATCTGCAT 1182373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| | | |||||| || | ||| |||||||| | ||||||||||| Sbjct 1182371 CCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCT 1182312 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || || || ||||| ||||||||||| | ||| || || | || Sbjct 1182311 AAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 1182252 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||||||| || ||| | || || | ||| || ||| ||| ||| || Sbjct 1182251 ATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCG-GAGCTCTCAAC 1182193 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || | || || |||||||| |||||| Sbjct 1182192 CTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1182144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380877833792574