Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq50617 145 1e-29 seq1761 95.1 2e-14 seq51957 89.7 7e-13 seq1889 86.0 8e-12 >seq50617 Length=115889 Score = 145 bits (160), Expect = 1e-29 Identities = 257/369 (70%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||| ||||| ||||| || | || | |||||||| || ||||| Sbjct 92430 CACGCGAAGTCGCAATGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 92371 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| | || |||||||| | ||| ||||| | |||| | | | || || ||||| Sbjct 92370 CCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 92312 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCACTGTCATG 42240 ||| ||||| || ||| ||||| || || | ||| || | || | | | ||| Sbjct 92311 GATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTCG-- 92254 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| | ||||||||| ||||| || | || || ||||||| Sbjct 92253 -ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATG 92195 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| || || |||| ||| || | || || || | ||| ||||||||||| Sbjct 92194 GAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACAT 92135 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || ||||| ||||| ||||| ||||| || |||||||| | |||||||| ||| Sbjct 92134 CTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAAC 92075 Query 42421 CTGTACTTC 42429 ||| || || Sbjct 92074 CTGGACCTC 92066 >seq1761 Length=289715 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || |||||||| | ||| ||||| || || || ||||| | ||||| | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATT 72534 ||| || | ||||| || || || || ||| ||| ||||| || || || | ||| Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTC--ATTCTTGTGAATTCCAACAGCAACCCTCATC 164827 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 ||||| || ||||||||||| || | ||| | | ||||| | ||||||| | || Sbjct 164828 AACATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCA 164887 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 72647 | ||||| |||||||| || | || ||||||||| || || || || || Sbjct 164888 AGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| ||||| || |||||| || |||| || ||| ||||| ||||| | ||||| Sbjct 163880 TTCAAACTCTTCACCCCAACAATCTGCTAAACCTGGAGCCTCATTAGGACAAAATAATGA 163939 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||||| ||||| | | |||| || ||| ||||||||||| | |||||| || ||| Sbjct 163940 CCACTGTCCATTACTTTGGACTCTTTCCATGAAGAGATCAGGCACCCAAAGTGCATAAAA 163999 Query 72063 TAGATCTCTGGTTCTATGCTCCTC 72086 |||||||| | | ||| ||||| Sbjct 164000 TAGATCTCGTGCACGATGTTCCTC 164023 >seq51957 Length=105213 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCC 71975 |||| ||| |||| |||||| ||| || || || || |||||| || | | | || || Sbjct 20505 TCTCCTTCATATTTTGTATACAATTTCTCAAATTCTTCACCCCAA-CAGTCTGCCAAACC 20447 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| ||||| ||||| | ||||||||| | ||||| | | |||| || ||| || Sbjct 20446 CGGAGCCTCATTTGGACAAAACAATGACCAATGTCCATTACTTTGGACTCTTTCCATGAA 20387 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||||||| | ||| ||||| ||||||||| | | | ||||||||| Sbjct 20386 GAGATCAGGCACCCACAGAGCATAAAATAGATCCCGTGCACGATGCTCCTC 20336 >seq1889 Length=778003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 |||| ||||| || || || || || || ||||||||| || | || || ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 ||||| || || | ||| ||||| | ||||||| | |||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTC 72070 |||| ||||||||||| ||||||||||| Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTC 333053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670251593240280